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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/ngs-sdk">Debian Med / ngs-sdk</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ngs-sdk/commit/8d9ec81b816dd7748828c5f9e6a39e513d2b4b41">8d9ec81b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-10T16:43:31+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.10.1</pre>
</li>
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<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
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<li class="file-stats">
<a href="#f98be49a2a6515f0302723b40b4b82860986c580">
ngs-bam/Makefile.vers
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<li class="file-stats">
<a href="#75d5ebef8f89841a6c6062cdd5e4e9357559507b">
ngs-java/Makefile.vers
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<li class="file-stats">
<a href="#988c7884622751a70575d311a52f0cf7c6dac634">
ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java
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<li class="file-stats">
<a href="#00c5794527e4b89e38d8f4d3dca073073a520f9e">
ngs-python/Makefile.vers
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<li class="file-stats">
<a href="#5f3a5a2a37d2205004e8763a62a2c46a5ad2633f">
ngs-sdk/Makefile.vers
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<li class="file-stats">
<a href="#885b55c1b98425ecab7e6e1f3c61d3ebd3ee653c">
ngs-sdk/dispatch/version.h
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</ul>
<h4>Changes:</h4>
<li id="7facec255884dc55d3818e4dfbea89b1bdd7f49e">
<a href="https://salsa.debian.org/med-team/ngs-sdk/commit/8d9ec81b816dd7748828c5f9e6a39e513d2b4b41#7facec255884dc55d3818e4dfbea89b1bdd7f49e"><strong>CHANGES.md</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="markdown"><span class="gh" style="color: #999;"># NCBI External Developer Release:</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="markdown"></span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="markdown"></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## NGS SDK 2.10.1</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**December 16, 2019**</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="markdown"> <span class="gs" style="font-weight: 600;">**ngs**</span>: changed version to match that of _ncbi-vdb_</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## NGS SDK 2.10.0</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**August 19, 2019**</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="markdown"></span>
</pre>
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<li id="f98be49a2a6515f0302723b40b4b82860986c580">
<a href="https://salsa.debian.org/med-team/ngs-sdk/commit/8d9ec81b816dd7748828c5f9e6a39e513d2b4b41#f98be49a2a6515f0302723b40b4b82860986c580"><strong>ngs-bam/Makefile.vers</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,4 +23,4 @@</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># ===========================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># NGS-BAM and library version</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="make"><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> 2.10.<span class="idiff left right">0</span></span></pre>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="make"><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> 2.10.<span class="idiff left right">1</span></span></pre>
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<a href="https://salsa.debian.org/med-team/ngs-sdk/commit/8d9ec81b816dd7748828c5f9e6a39e513d2b4b41#75d5ebef8f89841a6c6062cdd5e4e9357559507b"><strong>ngs-java/Makefile.vers</strong></a>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># ===========================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># NGS-JAVA and library version</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="make"><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> 2.10.<span class="idiff left right">0</span></span></pre>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="make"><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> 2.10.<span class="idiff left right">1</span></span></pre>
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<a href="https://salsa.debian.org/med-team/ngs-sdk/commit/8d9ec81b816dd7748828c5f9e6a39e513d2b4b41#988c7884622751a70575d311a52f0cf7c6dac634"><strong>ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,6 +29,6 @@ package gov.nih.nlm.ncbi.ngs;</td>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="java"><span class="kd" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">LibDependencies</span> <span class="o" style="font-weight: 600;">{</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="java"> <span class="kd" style="font-weight: 600;">final</span> <span class="kd" style="font-weight: 600;">static</span> <span class="nc" style="color: #458; font-weight: 600;">String</span> <span class="no" style="color: #008080;">NGS_SDK</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"ngs-sdk"</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="java"> <span class="kd" style="font-weight: 600;">final</span> <span class="kd" style="font-weight: 600;">static</span> <span class="nc" style="color: #458; font-weight: 600;">String</span> <span class="no" style="color: #008080;">NCBI_VDB</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"ncbi-vdb"</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="java"> <span class="kd" style="font-weight: 600;">final</span> <span class="kd" style="font-weight: 600;">static</span> <span class="nc" style="color: #458; font-weight: 600;">String</span> <span class="no" style="color: #008080;">NGS_SDK_VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"2.10.<span class="idiff left right">0</span>"</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="java"> <span class="kd" style="font-weight: 600;">final</span> <span class="kd" style="font-weight: 600;">static</span> <span class="nc" style="color: #458; font-weight: 600;">String</span> <span class="no" style="color: #008080;">NCBI_VDB_VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"2.10.<span class="idiff left right">0</span>"</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="java"> <span class="kd" style="font-weight: 600;">final</span> <span class="kd" style="font-weight: 600;">static</span> <span class="nc" style="color: #458; font-weight: 600;">String</span> <span class="no" style="color: #008080;">NGS_SDK_VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"2.10.<span class="idiff left right">1</span>"</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="java"> <span class="kd" style="font-weight: 600;">final</span> <span class="kd" style="font-weight: 600;">static</span> <span class="nc" style="color: #458; font-weight: 600;">String</span> <span class="no" style="color: #008080;">NCBI_VDB_VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"2.10.<span class="idiff left right">1</span>"</span><span class="o" style="font-weight: 600;">;</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="java"><span class="o" style="font-weight: 600;">}</span></span></pre>
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<a href="https://salsa.debian.org/med-team/ngs-sdk/commit/8d9ec81b816dd7748828c5f9e6a39e513d2b4b41#00c5794527e4b89e38d8f4d3dca073073a520f9e"><strong>ngs-python/Makefile.vers</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,4 +23,4 @@</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># ===========================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># NGS-PYTHON and library version</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="make"><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> 2.10.<span class="idiff left right">0</span></span></pre>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="make"><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> 2.10.<span class="idiff left right">1</span></span></pre>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># ===========================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># NGS-SDK and library version</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="make"><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> 2.10.<span class="idiff left right">0</span></span></pre>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="make"><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> 2.10.<span class="idiff left right">1</span></span></pre>
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<a href="https://salsa.debian.org/med-team/ngs-sdk/commit/8d9ec81b816dd7748828c5f9e6a39e513d2b4b41#885b55c1b98425ecab7e6e1f3c61d3ebd3ee653c"><strong>ngs-sdk/dispatch/version.h</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define NGS_SDK_VERSION "2.10.<span class="idiff left right">0</span>"</span></span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define NGS_SDK_VERSION "2.10.<span class="idiff left right">1</span>"</span></span></pre>
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