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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/fasta3">Debian Med / fasta3</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fasta3/commit/d9231df1ec5b9feb7678dfa48c639e52487c0f0f">d9231df1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-11T06:37:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Breaks+Replaces: fasta3 (<< 36.3.8h)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fasta3/commit/14aa35f3786e6708aabcb52ec6900264d330665f">14aa35f3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-11T06:38:34+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">R-U: Trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fasta3/commit/048be9e27974a7cdeabd6b11591d2d589b5a8a92">048be9e2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-11T06:38:34+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">R-U: Trailing whitespace in debian/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fasta3/commit/32a12f6cdab9b735d92031f42eb8431a21e5f26d">32a12f6c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-11T06:38:35+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Trim trailing whitespace.
Fixes: lintian: file-contains-trailing-whitespace
See-also: https://lintian.debian.org/tags/file-contains-trailing-whitespace.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fasta3/commit/95a4c5e17f6a0b11d74deb3dbe278cd91d0a289f">95a4c5e1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-11T06:38:44+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in Homepage field.
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fasta3/commit/ab2073c55bc9757a820beb67af09d19f301683b8">ab2073c5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-11T06:51:55+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix regexp in d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fasta3/commit/aeeefb9f59aa5421cf5533aab4472c1244984add">aeeefb9f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-11T06:56:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/fasta3/compare/95a8bce468d62c0a89ace9010063aa6c015dfb1f...aeeefb9f59aa5421cf5533aab4472c1244984add#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">fasta3 (36.3.8h-2) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Breaks+Replaces: fasta3 (<< 36.3.8h)</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Closes: #948597</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Remove trailing whitespace in debian/copyright</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Remove trailing whitespace in debian/rules</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Trim trailing whitespace.</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Use secure URI in Homepage field.</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Fix regexp in d/copyright</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Package fasta3-doc in section non-free/doc</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sat, 11 Jan 2020 06:55:15 +0100</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">fasta3 (36.3.8h-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/fasta3/compare/95a8bce468d62c0a89ace9010063aa6c015dfb1f...aeeefb9f59aa5421cf5533aab4472c1244984add#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,7 +9,7 @@ Build-Depends: debhelper-compat (= 12),</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Standards-Version: 4.4.1</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/fasta3</span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/fasta3.git</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">Homepage: http://fasta.bioch.virginia.edu</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Homepage: http<span class="idiff left right">s</span>://fasta.bioch.virginia.edu</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Package: fasta3</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Architecture: any</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -61,8 +61,11 @@ Description: tools for searching collections of biological sequences</td>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext">Package: fasta3-doc</span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext">Section: non-free/doc</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext">Breaks: fasta3 (<< 36.3.8h)</span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext">Replaces: fasta3 (<< 36.3.8h)</span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext">Description: user guide for FASTA tools</span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> The FASTA programs find regions of local or global similarity between</span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> Protein or DNA sequences, either by searching Protein or DNA databases,</span>
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<a href="https://salsa.debian.org/med-team/fasta3/compare/95a8bce468d62c0a89ace9010063aa6c015dfb1f...aeeefb9f59aa5421cf5533aab4472c1244984add#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,7 +9,7 @@ License: Apache-2.0</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Files: src/wm_align.c</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Copyright: William R. Pearson, University of Virginia</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> Webb Miller, Penn State University<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> Webb Miller, Penn State University</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">License: Apache-2.0</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Files: src/karlin.c</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,7 +21,7 @@ Copyright: 2004, Erik Lindahl <lindahl@sbc.su.se></td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> Stockholm Bioinformatics Center, 2004</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">License: Apache-2.0</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext">Files: src/glo<span class="idiff left right">[bc]al_sse2.[ch]</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">Files: src/glo<span class="idiff left right">*sse2.*</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> src/smith_waterman_sse2.c</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Copyright: 2006,2010 Michael Farrar <farrar.michael@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">License: Academics-only</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/fasta3/compare/95a8bce468d62c0a89ace9010063aa6c015dfb1f...aeeefb9f59aa5421cf5533aab4472c1244984add#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,7 +22,7 @@ LDFLAGS+=-flto</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">#export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> dh $@<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> cd src && $(MAKE) -f $(MAKEFILE)</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,4 +32,3 @@ override_dh_auto_clean:</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">override_dh_compress:</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> dh_compress --exclude=.pdf</span></pre>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"></span></pre>
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