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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/bowtie">Debian Med / bowtie</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/bowtie/commit/7e216648d81a02ba5b45f242774f7590b5934376">7e216648</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2020-01-11T12:15:01+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Switch to single threaded testing, add riscv64
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<h4>3 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#0a860cdba9fc7bcf6b28c442b89b1e1f2c4add92">
debian/patches/simple-test
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/bowtie/commit/7e216648d81a02ba5b45f242774f7590b5934376#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">bowtie (1.2.3+dfsg-4) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Switch to single threaded testing, add riscv64</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Sat, 11 Jan 2020 12:14:53 +0100</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">bowtie (1.2.3+dfsg-3) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Team upload.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/bowtie/commit/7e216648d81a02ba5b45f242774f7590b5934376#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,7 +22,7 @@ Vcs-Git: https://salsa.debian.org/med-team/bowtie.git</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Homepage: http://bowtie-bio.sourceforge.net/</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Package: bowtie</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext">Architecture: alpha any-amd64 arm64 mips64el ppc64 ppc64el s390x sparc64</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">Architecture: alpha any-amd64 arm64 mips64el ppc64 ppc64el s390x sparc64<span class="idiff left right"> riscv64</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Multi-Arch: foreign</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> ${misc:Depends},</span>
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<a href="https://salsa.debian.org/med-team/bowtie/commit/7e216648d81a02ba5b45f242774f7590b5934376#0a860cdba9fc7bcf6b28c442b89b1e1f2c4add92"><strong>debian/patches/simple-test</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,7 @@ Description: Sys::Info isn't packaged for Debian, so work around it</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"> my $build_args = "";</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"> $build_args .= " -C " if $color;</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- my $cmd = "$bowtie_build $idx_type --threads $nthreads --quiet --sanity $build_args $fa .simple_tests.tmp";</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ my $cmd = "$bowtie_build $idx_type --<span class="idiff left right">threads $nthreads --</span>quiet $build_args $fa .simple_tests.tmp";</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ my $cmd = "$bowtie_build $idx_type --quiet $build_args $fa .simple_tests.tmp";</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> print "$cmd\n";</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> system($cmd);</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> ($? == 0) || die "Bad exitlevel from bowtie-build: $?";</span>
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