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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/qtltools">Debian Med / qtltools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/4a1c9eb81e680f1a80d256ccc52dc18c21c548c6">4a1c9eb8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-11T19:40:57+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Make really sure examples.tar.xz will not contain itself
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/aa1ddea848a89d64007eb40bfcf4690a4d3873ab">aa1ddea8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-11T19:41:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/732a7e767dd2f9dad7165a3329406dab5d53e949">732a7e76</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-11T19:41:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright).</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/5c40adf27059379e9381cebc3233cc4c3464dceb">5c40adf2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-11T20:49:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Exclude examples.tar.xz properly
</pre>
</li>
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
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</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/qtltools/compare/38cd3fd8328d4713b2129ce6dbfe23eb52a13602...5c40adf27059379e9381cebc3233cc4c3464dceb#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">qtltools (1.2+dfsg-3) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Make really sure examples.tar.xz will not contain itself</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * debhelper-compat 12</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Remove obsolete fields Contact, Name from debian/upstream/metadata</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> (already present in machine-readable debian/copyright).</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sat, 11 Jan 2020 19:40:18 +0100</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">qtltools (1.2+dfsg-2) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Team upload.</span>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/qtltools/compare/38cd3fd8328d4713b2129ce6dbfe23eb52a13602...5c40adf27059379e9381cebc3233cc4c3464dceb#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">12</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/qtltools/compare/38cd3fd8328d4713b2129ce6dbfe23eb52a13602...5c40adf27059379e9381cebc3233cc4c3464dceb#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Dylan Aïssi <daissi@debian.org></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 12~</span>),</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 12</span>),</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> libblas-dev,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> libboost-iostreams-dev,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> libboost-program-options-dev,</span>
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<a href="https://salsa.debian.org/med-team/qtltools/compare/38cd3fd8328d4713b2129ce6dbfe23eb52a13602...5c40adf27059379e9381cebc3233cc4c3464dceb#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,5 +19,6 @@ override_dh_auto_clean:</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> dh_auto_clean</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> cd debian/upstream.example && find -type f | LC_ALL=C sort | tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> cd debian/upstream.example && find -type f | LC_ALL=C sort | grep -v examples.tar.xz | \</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> dh_install</span></pre>
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<a href="https://salsa.debian.org/med-team/qtltools/compare/38cd3fd8328d4713b2129ce6dbfe23eb52a13602...5c40adf27059379e9381cebc3233cc4c3464dceb#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Contact: Olivier Delaneau <olivier.delaneau at gmail.com></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Name: QTLtools</span>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> - Author: ></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> Olivier Delaneau and Halit Ongen and Andrew A. Brown and Alexandre</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> Fort and Nikolaos I. Panousis and Emmanouil T. Dermitzakis</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> Title: ></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> A complete tool set for molecular QTL discovery and analysis</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> Journal: Nature Communications</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> Year: 2017</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> DOI: 10.1038/ncomms15452</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> URL: https://www.nature.com/articles/ncomms15452</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> eprint: https://www.nature.com/articles/ncomms15452.pdf</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> - Author: ></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> Alexandre Fort and Nikolaos I. Panousis and Marco Garieri and</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> Stylianos E. Antonarakis and Tuuli Lappalainen and Emmanouil</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> T. Dermitzakis and Olivier Delaneau</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> Title: ></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> MBV: a method to solve sample mislabeling and detect technical bias</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> in large combined genotype and sequencing assay datasets</span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> Journal: Bioinformatics</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> Year: 2017</span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> DOI: 10.1093/bioinformatics/btx074</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> URL: "https://academic.oup.com/bioinformatics/article-lookup/doi/\</span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> 10.1093/bioinformatics/btx074"</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">- Author: ></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Olivier Delaneau and Halit Ongen and Andrew A. Brown and Alexandre</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Fort and Nikolaos I. Panousis and Emmanouil T. Dermitzakis</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Title: ></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> A complete tool set for molecular QTL discovery and analysis</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Journal: Nature Communications</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Year: 2017</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> DOI: 10.1038/ncomms15452</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> URL: https://www.nature.com/articles/ncomms15452</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> eprint: https://www.nature.com/articles/ncomms15452.pdf</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">- Author: ></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> Alexandre Fort and Nikolaos I. Panousis and Marco Garieri and</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Stylianos E. Antonarakis and Tuuli Lappalainen and Emmanouil</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> T. Dermitzakis and Olivier Delaneau</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> Title: ></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> MBV: a method to solve sample mislabeling and detect technical bias</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> in large combined genotype and sequencing assay datasets</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> Journal: Bioinformatics</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> Year: 2017</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> DOI: 10.1093/bioinformatics/btx074</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> URL: https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btx074</span>
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26
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Registry:</span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"><span class="idiff left right"> </span>- Name: SciCrunch</span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> <span class="idiff left right"> </span>Entry: NA</span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"><span class="idiff left right"> </span>- Name: OMICtools</span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> <span class="idiff left right"> </span>Entry: OMICS_18457</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"><span class="idiff left right"> </span>- Name: bio.tools</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> <span class="idiff left right"> </span>Entry: qtltools</span></pre>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">- Name: SciCrunch</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> Entry: NA</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">- Name: OMICtools</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> Entry: OMICS_18457</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">- Name: bio.tools</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> Entry: qtltools</span></pre>
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