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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl">Debian Med / libbio-db-seqfeature-perl</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/commit/e6fc3b12c1e8d01a8656809737a11b562c539fa1">e6fc3b12</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-13T13:17:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.7.4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/commit/c3547e597c89c901d07e913ab8869377251026a2">c3547e59</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-13T13:17:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/commit/55d6a8a0c0afdf00469881b99d4e50da39a0b602">55d6a8a0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-13T13:17:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.7.4'
Update to upstream version '1.7.4'
with Debian dir 6c6166acc70a35fe73dc1eabb58c58eb305fde15</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/commit/a3699df159cedf01d7a604465d2b0a662a3f5340">a3699df1</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-13T13:17:14+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.4.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/commit/43454a2c32ff7ba33569402b6ee2678ee1e1d25f">43454a2c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-13T16:19:37+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">1.7.4-1
</pre>
</li>
</ul>
<h4>27 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8aa57de6dce6ee1c35c6aba7426503281876b258">
Changes
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<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
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</li>
<li class="file-stats">
<a href="#4a6da301633ce81aa21cac64ffb95d87c6894995">
META.json
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<li class="file-stats">
<a href="#3b7f8f92275828b66b32cb6c6aeb61e73c1d7587">
META.yml
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<li class="file-stats">
<a href="#a6a4139b0f32af1594c237ebe008acaf8217f505">
Makefile.PL
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#384adeead2ae33537082bc3db4b10a27220e76ca">
dist.ini
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<li class="file-stats">
<a href="#07da4782d6598d284c394afa1beb735a9fd22282">
lib/Bio/DB/SeqFeature.pm
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<li class="file-stats">
<a href="#bfe07ac2afd203609b761d3ed902fdb2918dd0cb">
lib/Bio/DB/SeqFeature/NormalizedFeature.pm
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<li class="file-stats">
<a href="#d14db3efe15292ddbe3a781114c3e19f7a056ffa">
lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm
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<li class="file-stats">
<a href="#4223e56275f2cbdbd96a53d82991dcb84ce9b6dd">
lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm
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<li class="file-stats">
<a href="#381cfcc966cf4a3cd94427536ecaaad48240500a">
lib/Bio/DB/SeqFeature/Segment.pm
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<li class="file-stats">
<a href="#331afd0bc32c94d5d9542b9d8ae62e5c6753404d">
lib/Bio/DB/SeqFeature/Store.pm
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<li class="file-stats">
<a href="#d984605e490b9dac6a9a8c1da5e9c17cd2750bf9">
lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm
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<li class="file-stats">
<a href="#c417b73737c9e5386f9c3d2af22c98c703c14850">
lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm
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<li class="file-stats">
<a href="#305c2c7164104ffeecf74c430fe38c7a1d8915cf">
lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm
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<li class="file-stats">
<a href="#2787b37a58260cc5c2609a9a64bb91c0be33c68d">
lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm
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<li class="file-stats">
<a href="#02c8ff2c104b3e4682a8393e55e66c9b54bd1485">
lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm
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<li class="file-stats">
<a href="#c1de5c6353dc89cf8732ff0483f6807d833a888f">
lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm
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<li class="file-stats">
<a href="#fab887d559823b66727f671ef1a74e5bc890662f">
lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm
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<li class="file-stats">
<a href="#dfd15a9e6d01787f1cf3dcb4be8c2ee7288f538e">
lib/Bio/DB/SeqFeature/Store/Loader.pm
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<li class="file-stats">
<a href="#2932ac8277b3ea1932411477718943a1aa7af623">
lib/Bio/DB/SeqFeature/Store/bdb.pm
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<li class="file-stats">
<a href="#cc91de02ad60d5aaf851235c1c3c3cd75606b65e">
lib/Bio/DB/SeqFeature/Store/berkeleydb.pm
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<li class="file-stats">
<a href="#74ed0c74952ad88c771ce8baf101264122cda157">
lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm
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<li class="file-stats">
<a href="#640ac1655aaeeaadf8b8782cb5e60929f8457950">
lib/Bio/DB/SeqFeature/Store/memory.pm
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<li class="file-stats">
<a href="#8866fb8e79987009d229877b1a0014451997870d">
t/00-compile.t
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</ul>
<h4>Changes:</h4>
<li id="8aa57de6dce6ee1c35c6aba7426503281876b258">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#8aa57de6dce6ee1c35c6aba7426503281876b258"><strong>Changes</strong></a>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Summary of important user-visible changes for Bio-DB-SeqFeature</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">---------------------------------------------------------------</span>
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">1.7.4 2020-01-08 22:03:25-06:00 America/Chicago</span>
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<td class="diff-line-num new old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * The prior release required both DBD::Pg and DBD::SQLite; we now </span>
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<td class="diff-line-num new old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> skip these.</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * We now explicitly require Bio::DB::GFF::Typename; tests depend on </span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> it and the dynamic loading used (which caused issue #1) now doesn't make sense.</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">1.7.3 2019-02-19 14:26:06-05:00 America/Detroit</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * First release after split from bioperl-live.</span></pre>
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<li id="0398ccd0f49298b10a3d76a47800d2ebecd49859">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#0398ccd0f49298b10a3d76a47800d2ebecd49859"><strong>LICENSE</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">This software is copyright (c) 20<span class="idiff left right">19</span> by Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research.</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">This software is copyright (c) 20<span class="idiff left right">20</span> by Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research.</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">This is free software; you can redistribute it and/or modify it under</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">the same terms as the Perl 5 programming language system itself.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,7 +12,7 @@ b) the "Artistic License"</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">--- The GNU General Public License, Version 1, February 1989 ---</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">This software is Copyright (c) 20<span class="idiff left right">19</span> by Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research.</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">This software is Copyright (c) 20<span class="idiff left right">20</span> by Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research.</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">This is free software, licensed under:</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -272,7 +272,7 @@ That's all there is to it!</td>
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272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext">--- The Artistic License 1.0 ---</span>
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="plaintext">This software is Copyright (c) 20<span class="idiff left right">19</span> by Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research.</span>
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext">This software is Copyright (c) 20<span class="idiff left right">20</span> by Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research.</span>
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276
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="plaintext">This is free software, licensed under:</span>
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="plaintext"></span>
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<li id="4a6da301633ce81aa21cac64ffb95d87c6894995">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#4a6da301633ce81aa21cac64ffb95d87c6894995"><strong>META.json</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Nathan Weeks <Nathan.Weeks@ars.usda.gov>"</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">],</span></span>
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"dynamic_config"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"generated_by"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.1500<span class="idiff left right">05</span>"</span><span class="p">,</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"generated_by"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.1500<span class="idiff left right">10</span>"</span><span class="p">,</span></span>
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9
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"license"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">[</span></span>
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10
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"perl_5"</span></span>
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11
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">],</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,6 +29,7 @@</td>
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29
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<td class="diff-line-num new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"runtime"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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30
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<td class="diff-line-num new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"requires"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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31
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<td class="diff-line-num new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Bio::DB::Fasta"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Bio::DB::GFF::Typename"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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32
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<td class="diff-line-num new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
33
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Bio::DB::GFF::Util::Rearrange"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
33
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34
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Bio::Location::Simple"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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34
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35
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Bio::PrimarySeq"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,8 +40,6 @@</td>
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39
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40
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Bio::SeqFeature::Lite"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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40
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<td class="diff-line-num new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Carp"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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41
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<td class="diff-line-num new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
42
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Cwd"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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42
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"DBD::Pg"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
43
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<td class="diff-line-num new_line old" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"DBD::SQLite"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
44
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<td class="diff-line-num new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"DBI"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
45
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<td class="diff-line-num new_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
44
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"DB_File"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
46
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<td class="diff-line-num new_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
45
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Fcntl"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -90,10 +89,10 @@</td>
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90
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<td class="diff-line-num new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"web"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"https://github.com/bioperl/bio-db-seqfeature"</span></span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">}</span></span>
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91
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"1.7.<span class="idiff left right">3</span>"</span><span class="p">,</span></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"1.7.<span class="idiff left right">4</span>"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"x_Dist_Zilla"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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94
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"perl"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"5.02<span class="idiff left right">2</span>001"</span></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"5.02<span class="idiff left right">8</span>001"</span></span>
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96
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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98
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97
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"plugins"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">[</span></span>
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -201,7 +200,7 @@</td>
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200
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"class"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Dist::Zilla::Plugin::Test::Compile"</span><span class="p">,</span></span>
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202
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"config"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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203
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Dist::Zilla::Plugin::Test::Compile"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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204
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"bail_out_on_fail"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;"><span class="idiff left right">"0"</span></span><span class="p">,</span></span>
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<td class="diff-line-num new old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"bail_out_on_fail"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="mi" style="color: #099;"><span class="idiff left right">0</span></span><span class="p">,</span></span>
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205
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204
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"fail_on_warning"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"author"</span><span class="p">,</span></span>
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206
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"fake_home"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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207
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206
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"filename"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"t/00-compile.t"</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -213,7 +212,10 @@</td>
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213
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212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"script_finder"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">[</span></span>
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214
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213
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">":PerlExecFiles"</span></span>
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215
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214
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">],</span></span>
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216
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"skips"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">[],</span></span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"skips"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">[</span></span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Bio::DB::SeqFeature::Store::DBI::Pg"</span><span class="p">,</span></span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Bio::DB::SeqFeature::Store::DBI::SQLite"</span></span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">],</span></span>
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217
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219
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"switch"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">[]</span></span>
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220
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">}</span></span>
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221
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -265,7 +267,7 @@</td>
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265
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"changelog"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Changes"</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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267
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269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Dist::Zilla::Role::Git::Repo"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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268
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"git_version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"2.<span class="idiff left right">7.4</span>"</span><span class="p">,</span></span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"git_version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"2.<span class="idiff left right">20.1</span>"</span><span class="p">,</span></span>
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269
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271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"repo_root"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"."</span></span>
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270
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272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">}</span></span>
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273
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -288,7 +290,7 @@</td>
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290
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"changelog"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Changes"</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Dist::Zilla::Role::Git::Repo"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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291
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"git_version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"2.<span class="idiff left right">7.4</span>"</span><span class="p">,</span></span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"git_version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"2.<span class="idiff left right">20.1</span>"</span><span class="p">,</span></span>
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292
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294
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"repo_root"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"."</span></span>
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293
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295
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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294
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296
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Dist::Zilla::Role::Git::StringFormatter"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -305,12 +307,12 @@</td>
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305
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<td class="diff-line-num new_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
307
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<pre style="margin: 0;"> <span id="LC307" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"branch"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="kc" style="font-weight: 600;">null</span><span class="p">,</span></span>
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306
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<td class="diff-line-num new_line" data-linenumber="308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
308
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<pre style="margin: 0;"> <span id="LC308" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"changelog"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Changes"</span><span class="p">,</span></span>
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307
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<td class="diff-line-num new_line" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
309
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"signed"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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308
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<td class="diff-line-num new_line old" data-linenumber="310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"tag"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Bio-DB-SeqFeature-v1.7.<span class="idiff left right">3</span>"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"tag"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Bio-DB-SeqFeature-v1.7.<span class="idiff left right">4</span>"</span><span class="p">,</span></span>
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309
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<td class="diff-line-num new_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
311
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"tag_format"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"%N-v%v"</span><span class="p">,</span></span>
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310
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312
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"tag_message"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"%N-v%v"</span></span>
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311
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313
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<pre style="margin: 0;"> <span id="LC313" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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312
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314
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Dist::Zilla::Role::Git::Repo"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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313
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"git_version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"2.<span class="idiff left right">7.4</span>"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
315
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"git_version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"2.<span class="idiff left right">20.1</span>"</span><span class="p">,</span></span>
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314
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316
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"repo_root"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"."</span></span>
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315
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317
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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316
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<td class="diff-line-num new_line" data-linenumber="318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
318
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<pre style="margin: 0;"> <span id="LC318" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Dist::Zilla::Role::Git::StringFormatter"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="374" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="376" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -374,12 +376,12 @@</td>
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374
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376
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<pre style="margin: 0;"> <span id="LC376" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"zilla"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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375
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377
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<pre style="margin: 0;"> <span id="LC377" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"class"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Dist::Zilla::Dist::Builder"</span><span class="p">,</span></span>
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376
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378
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<pre style="margin: 0;"> <span id="LC378" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"config"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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377
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<pre style="margin: 0;">-<span id="LC377" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"is_trial"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;"><span class="idiff left right">"0"</span></span></span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"is_trial"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="mi" style="color: #099;"><span class="idiff left right">0</span></span></span>
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378
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380
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<pre style="margin: 0;"> <span id="LC380" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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379
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<td class="diff-line-num new_line" data-linenumber="381" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
381
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<pre style="margin: 0;"> <span id="LC381" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"6.012"</span></span>
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380
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382
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<pre style="margin: 0;"> <span id="LC382" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">}</span></span>
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381
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383
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<pre style="margin: 0;"> <span id="LC383" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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382
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<td class="diff-line-num new_line old" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC382" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"x_generated_by_perl"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"v5.2<span class="idiff left right">2</span>.1"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
384
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"x_generated_by_perl"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"v5.2<span class="idiff left right">8</span>.1"</span><span class="p">,</span></span>
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383
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385
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<pre style="margin: 0;"> <span id="LC385" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"x_serialization_backend"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Cpanel::JSON::XS version 4.09"</span></span>
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384
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386
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<pre style="margin: 0;"> <span id="LC386" class="line" lang="json"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC387" class="line" lang="json"></span></pre>
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<li id="3b7f8f92275828b66b32cb6c6aeb61e73c1d7587">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#3b7f8f92275828b66b32cb6c6aeb61e73c1d7587"><strong>META.yml</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,7 +14,7 @@ build_requires:</td>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="yaml"><span class="na" style="color: #008080;">configure_requires</span><span class="pi">:</span></span>
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15
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="yaml"> <span class="s" style="color: #d14;">ExtUtils::MakeMaker: '0'</span></span>
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16
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="yaml"><span class="na" style="color: #008080;">dynamic_config</span><span class="pi">:</span> <span class="m" style="color: #099;">0</span></span>
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17
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<td class="diff-line-num new_line old" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="yaml"><span class="na" style="color: #008080;">generated_by</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">Dist::Zilla</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">version</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">6.012,</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">CPAN::Meta::Converter</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">version</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">2.1500<span class="idiff left right">05</span>'</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="yaml"><span class="na" style="color: #008080;">generated_by</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">Dist::Zilla</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">version</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">6.012,</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">CPAN::Meta::Converter</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">version</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">2.1500<span class="idiff left right">10</span>'</span></span>
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18
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="yaml"><span class="na" style="color: #008080;">license</span><span class="pi">:</span> <span class="s" style="color: #d14;">perl</span></span>
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19
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="yaml"><span class="na" style="color: #008080;">meta-spec</span><span class="pi">:</span></span>
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20
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="yaml"> <span class="na" style="color: #008080;">url</span><span class="pi">:</span> <span class="s" style="color: #d14;">http://module-build.sourceforge.net/META-spec-v1.4.html</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,6 +22,7 @@ meta-spec:</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="yaml"><span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Bio-DB-SeqFeature</span></span>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="yaml"><span class="na" style="color: #008080;">requires</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="yaml"> <span class="s" style="color: #d14;">Bio::DB::Fasta: '0'</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="yaml"> <span class="s" style="color: #d14;">Bio::DB::GFF::Typename: '0'</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="yaml"> <span class="s" style="color: #d14;">Bio::DB::GFF::Util::Rearrange: '0'</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="yaml"> <span class="s" style="color: #d14;">Bio::Location::Simple: '0'</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="yaml"> <span class="s" style="color: #d14;">Bio::PrimarySeq: '0'</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,8 +33,6 @@ requires:</td>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="yaml"> <span class="s" style="color: #d14;">Bio::SeqFeature::Lite: '0'</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="yaml"> <span class="s" style="color: #d14;">Carp</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">0'</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="yaml"> <span class="na" style="color: #008080;">Cwd</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">0'</span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="yaml"> <span class="s" style="color: #d14;">DBD::Pg: '0'</span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="yaml"> <span class="s" style="color: #d14;">DBD::SQLite: '0'</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="yaml"> <span class="na" style="color: #008080;">DBI</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">0'</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="yaml"> <span class="na" style="color: #008080;">DB_File</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">0'</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="yaml"> <span class="na" style="color: #008080;">Fcntl</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">0'</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -60,10 +59,10 @@ resources:</td>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="yaml"> <span class="na" style="color: #008080;">bugtracker</span><span class="pi">:</span> <span class="s" style="color: #d14;">https://github.com/bioperl/bio-db-seqfeature/issues</span></span>
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<td class="diff-line-num old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="yaml"> <span class="na" style="color: #008080;">homepage</span><span class="pi">:</span> <span class="s" style="color: #d14;">https://metacpan.org/release/Bio-DB-SeqFeature</span></span>
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<td class="diff-line-num old_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="yaml"> <span class="na" style="color: #008080;">repository</span><span class="pi">:</span> <span class="s" style="color: #d14;">git://github.com/bioperl/bio-db-seqfeature.git</span></span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="yaml"><span class="na" style="color: #008080;">version</span><span class="pi">:</span> <span class="s" style="color: #d14;">1.7.<span class="idiff left right">3</span></span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="yaml"><span class="na" style="color: #008080;">version</span><span class="pi">:</span> <span class="s" style="color: #d14;">1.7.<span class="idiff left right">4</span></span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="yaml"><span class="na" style="color: #008080;">x_Dist_Zilla</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="yaml"> <span class="na" style="color: #008080;">perl</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="yaml"> <span class="na" style="color: #008080;">version</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">5.02<span class="idiff left right">2</span>001'</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="yaml"> <span class="na" style="color: #008080;">version</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">5.02<span class="idiff left right">8</span>001'</span></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="yaml"> <span class="na" style="color: #008080;">plugins</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="yaml"> <span class="pi">-</span></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="yaml"> <span class="na" style="color: #008080;">class</span><span class="pi">:</span> <span class="s" style="color: #d14;">Dist::Zilla::Plugin::GatherDir</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -159,7 +158,9 @@ x_Dist_Zilla:</td>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="yaml"> <span class="na" style="color: #008080;">phase</span><span class="pi">:</span> <span class="s" style="color: #d14;">test</span></span>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="yaml"> <span class="na" style="color: #008080;">script_finder</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="yaml"> <span class="pi">-</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">:PerlExecFiles'</span></span>
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="yaml"> <span class="na" style="color: #008080;">skips</span><span class="pi">:</span> <span class="pi">[]</span></span>
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="yaml"> <span class="na" style="color: #008080;">skips</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">Bio::DB::SeqFeature::Store::DBI::Pg</span></span>
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">Bio::DB::SeqFeature::Store::DBI::SQLite</span></span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="yaml"> <span class="na" style="color: #008080;">switch</span><span class="pi">:</span> <span class="pi">[]</span></span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="yaml"> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">@BioPerl/Test::Compile'</span></span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="yaml"> <span class="na" style="color: #008080;">version</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">2.058'</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -199,7 +200,7 @@ x_Dist_Zilla:</td>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="yaml"> <span class="na" style="color: #008080;">allow_dirty_match</span><span class="pi">:</span> <span class="pi">[]</span></span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="yaml"> <span class="na" style="color: #008080;">changelog</span><span class="pi">:</span> <span class="s" style="color: #d14;">Changes</span></span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="yaml"> <span class="s" style="color: #d14;">Dist::Zilla::Role::Git::Repo:</span></span>
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="yaml"> <span class="s" style="color: #d14;">git_version</span><span class="pi">:</span> <span class="s" style="color: #d14;">2.<span class="idiff left right">7.4</span></span></span>
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="yaml"> <span class="s" style="color: #d14;">git_version</span><span class="pi">:</span> <span class="s" style="color: #d14;">2.<span class="idiff left right">20.1</span></span></span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="yaml"> <span class="s" style="color: #d14;">repo_root</span><span class="pi">:</span> <span class="s" style="color: #d14;">.</span></span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="yaml"> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">@BioPerl/Git::Check'</span></span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="yaml"> <span class="na" style="color: #008080;">version</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">2.045'</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -216,7 +217,7 @@ x_Dist_Zilla:</td>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="yaml"> <span class="na" style="color: #008080;">allow_dirty_match</span><span class="pi">:</span> <span class="pi">[]</span></span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="yaml"> <span class="na" style="color: #008080;">changelog</span><span class="pi">:</span> <span class="s" style="color: #d14;">Changes</span></span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="yaml"> <span class="s" style="color: #d14;">Dist::Zilla::Role::Git::Repo:</span></span>
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="yaml"> <span class="s" style="color: #d14;">git_version</span><span class="pi">:</span> <span class="s" style="color: #d14;">2.<span class="idiff left right">7.4</span></span></span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="yaml"> <span class="s" style="color: #d14;">git_version</span><span class="pi">:</span> <span class="s" style="color: #d14;">2.<span class="idiff left right">20.1</span></span></span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="yaml"> <span class="s" style="color: #d14;">repo_root</span><span class="pi">:</span> <span class="s" style="color: #d14;">.</span></span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="yaml"> <span class="s" style="color: #d14;">Dist::Zilla::Role::Git::StringFormatter:</span></span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="yaml"> <span class="s" style="color: #d14;">time_zone</span><span class="pi">:</span> <span class="s" style="color: #d14;">local</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -229,11 +230,11 @@ x_Dist_Zilla:</td>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="yaml"> <span class="s" style="color: #d14;">branch</span><span class="pi">:</span> <span class="s" style="color: #d14;">~</span></span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="yaml"> <span class="s" style="color: #d14;">changelog</span><span class="pi">:</span> <span class="s" style="color: #d14;">Changes</span></span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="yaml"> <span class="s" style="color: #d14;">signed</span><span class="pi">:</span> <span class="m" style="color: #099;">0</span></span>
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="yaml"> <span class="na" style="color: #008080;">tag</span><span class="pi">:</span> <span class="s" style="color: #d14;">Bio-DB-SeqFeature-v1.7.<span class="idiff left right">3</span></span></span>
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="yaml"> <span class="na" style="color: #008080;">tag</span><span class="pi">:</span> <span class="s" style="color: #d14;">Bio-DB-SeqFeature-v1.7.<span class="idiff left right">4</span></span></span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="yaml"> <span class="na" style="color: #008080;">tag_format</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">%N-v%v'</span></span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="yaml"> <span class="na" style="color: #008080;">tag_message</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">%N-v%v'</span></span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="yaml"> <span class="s" style="color: #d14;">Dist::Zilla::Role::Git::Repo:</span></span>
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="yaml"> <span class="s" style="color: #d14;">git_version</span><span class="pi">:</span> <span class="s" style="color: #d14;">2.<span class="idiff left right">7.4</span></span></span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="yaml"> <span class="s" style="color: #d14;">git_version</span><span class="pi">:</span> <span class="s" style="color: #d14;">2.<span class="idiff left right">20.1</span></span></span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="yaml"> <span class="s" style="color: #d14;">repo_root</span><span class="pi">:</span> <span class="s" style="color: #d14;">.</span></span>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="yaml"> <span class="s" style="color: #d14;">Dist::Zilla::Role::Git::StringFormatter:</span></span>
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240
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="yaml"> <span class="s" style="color: #d14;">time_zone</span><span class="pi">:</span> <span class="s" style="color: #d14;">local</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -284,5 +285,5 @@ x_Dist_Zilla:</td>
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284
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285
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="yaml"> <span class="na" style="color: #008080;">config</span><span class="pi">:</span></span>
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285
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286
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="yaml"> <span class="na" style="color: #008080;">is_trial</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">0'</span></span>
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286
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287
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="yaml"> <span class="na" style="color: #008080;">version</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">6.012'</span></span>
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287
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="yaml"><span class="na" style="color: #008080;">x_generated_by_perl</span><span class="pi">:</span> <span class="s" style="color: #d14;">v5.2<span class="idiff left right">2</span>.1</span></span>
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288
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="yaml"><span class="na" style="color: #008080;">x_serialization_backend</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">YAML::Tiny</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">version</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">1.<span class="idiff left right">69</span>'</span></span></pre>
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288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="yaml"><span class="na" style="color: #008080;">x_generated_by_perl</span><span class="pi">:</span> <span class="s" style="color: #d14;">v5.2<span class="idiff left right">8</span>.1</span></span>
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289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="yaml"><span class="na" style="color: #008080;">x_serialization_backend</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">YAML::Tiny</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">version</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">1.<span class="idiff left right">73</span>'</span></span></pre>
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<li id="a6a4139b0f32af1594c237ebe008acaf8217f505">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#a6a4139b0f32af1594c237ebe008acaf8217f505"><strong>Makefile.PL</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,6 +23,7 @@ my %WriteMakefileArgs = (</td>
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"> <span class="s2" style="color: #d14;">"NAME"</span> <span class="nl">=> "Bio</span><span class="o" style="font-weight: 600;">::</span><span class="nf" style="color: #900; font-weight: 600;">DB::SeqFeature"</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="make"> <span class="s2" style="color: #d14;">"PREREQ_PM"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">{</span></span>
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::DB::Fasta"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::DB::GFF::Typename"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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26
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<td class="diff-line-num new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::DB::GFF::Util::Rearrange"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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27
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::Location::Simple"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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28
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::PrimarySeq"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -33,8 +34,6 @@ my %WriteMakefileArgs = (</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::SeqFeature::Lite"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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34
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<td class="diff-line-num new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="make"> <span class="s2" style="color: #d14;">"Carp"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="make"> <span class="s2" style="color: #d14;">"Cwd"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="make"> <span class="s2" style="color: #d14;">"DBD::Pg"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="make"> <span class="s2" style="color: #d14;">"DBD::SQLite"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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38
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37
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="make"> <span class="s2" style="color: #d14;">"DBI"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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39
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38
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="make"> <span class="s2" style="color: #d14;">"DB_File"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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40
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39
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="make"> <span class="s2" style="color: #d14;">"Fcntl"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -66,7 +65,7 @@ my %WriteMakefileArgs = (</td>
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65
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="make"> <span class="s2" style="color: #d14;">"Test::More"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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67
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66
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="make"> <span class="s2" style="color: #d14;">"lib"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0</span></span>
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67
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">},</span></span>
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69
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="make"> <span class="s2" style="color: #d14;">"VERSION"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="s2" style="color: #d14;">"1.7.<span class="idiff left right">3</span>"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">,</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="make"> <span class="s2" style="color: #d14;">"VERSION"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="s2" style="color: #d14;">"1.7.<span class="idiff left right">4</span>"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">,</span></span>
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69
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="make"> <span class="s2" style="color: #d14;">"test"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">{</span></span>
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70
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="make"> <span class="s2" style="color: #d14;">"TESTS"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="s2" style="color: #d14;">"t/*.t"</span></span>
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71
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">}</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -75,6 +74,7 @@ my %WriteMakefileArgs = (</td>
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75
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74
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="make"></span>
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76
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75
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">my</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">%</span><span class="nv" style="color: #008080;">FallbackPrereqs</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">(</span></span>
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77
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76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::DB::Fasta"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::DB::GFF::Typename"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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78
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78
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::DB::GFF::Util::Rearrange"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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79
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::Location::Simple"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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80
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80
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::PrimarySeq"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -86,8 +86,6 @@ my %FallbackPrereqs = (</td>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::SeqFeature::Lite"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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87
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87
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="make"> <span class="s2" style="color: #d14;">"Carp"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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88
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88
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="make"> <span class="s2" style="color: #d14;">"Cwd"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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89
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="make"> <span class="s2" style="color: #d14;">"DBD::Pg"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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90
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="make"> <span class="s2" style="color: #d14;">"DBD::SQLite"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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91
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="make"> <span class="s2" style="color: #d14;">"DBI"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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92
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90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="make"> <span class="s2" style="color: #d14;">"DB_File"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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93
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91
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="make"> <span class="s2" style="color: #d14;">"Fcntl"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libbio-db-seqfeature-perl (1.7.4-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream version</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Standards-Version: 4.4.1</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 13 Jan 2020 13:17:15 +0100</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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1
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">libbio-db-seqfeature-perl (1.7.3-2) unstable; urgency=medium</span>
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2
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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3
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * debian/control: Breaks+Replaces the old libbio-bio-perl. (Closes: #942789)</span>
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<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,7 +11,7 @@ Build-Depends-Indep: libbio-perl-perl,</td>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> libdbi-perl,</span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> perl,</span>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> libtest-most-perl</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">Standards-Version: 4.4.<span class="idiff left right">0</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Standards-Version: 4.4.<span class="idiff left right">1</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/libbio-db-seqfeature.git</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Homepage: https://metacpan.org/release/Bio-DB-SeqFeature</span>
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<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#384adeead2ae33537082bc3db4b10a27220e76ca"><strong>dist.ini</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="ini"><span class="py">name</span> <span class="p">=</span> <span class="s" style="color: #d14;">Bio-DB-SeqFeature</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="ini"><span class="py">version</span> <span class="p">=</span> <span class="s" style="color: #d14;">1.7.<span class="idiff left right">3</span></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="ini"><span class="py">version</span> <span class="p">=</span> <span class="s" style="color: #d14;">1.7.<span class="idiff left right">4</span></span></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="ini"><span class="py">author</span> <span class="p">=</span> <span class="s" style="color: #d14;">Lincoln Stein <lstein@cshl.org></span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="ini"><span class="py">author</span> <span class="p">=</span> <span class="s" style="color: #d14;">Nathan Weeks <Nathan.Weeks@ars.usda.gov></span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="ini"><span class="py">copyright_holder</span> <span class="p">=</span> <span class="s" style="color: #d14;">Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research</span></span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="ini"><span class="py">license</span> <span class="p">=</span> <span class="s" style="color: #d14;">Perl_5</span></span>
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="ini"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="ini"><span class="c" style="color: #998; font-style: italic;">;; Modules should be fixed so that these don't have to be removed.</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="ini"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="ini"><span class="nn" style="color: #555;">[@BioPerl]</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="ini"><span class="py">-remove</span> <span class="p">=</span> <span class="s" style="color: #d14;">PodCoverageTests</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="ini"><span class="py">-remove</span> <span class="p">=</span> <span class="s" style="color: #d14;">PodWeaver</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="ini"><span class="py">-remove</span> <span class="p">=</span> <span class="s" style="color: #d14;">Test::EOL</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="ini"><span class="py">-remove</span> <span class="p">=</span> <span class="s" style="color: #d14;">Test::NoTabs</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="ini"></span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="ini"><span class="c" style="color: #998; font-style: italic;">;; Skip requiring DBD::Pg</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="ini"><span class="err" style="color: #a61717; background-color: #e3d2d2;">AutoPrereqs.skips</span><span class="nn" style="color: #555;">[0]</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">^DBD::\S+$</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="ini"></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="ini"><span class="c" style="color: #998; font-style: italic;">;; skip compilation tests, which fail if DBD::* modules aren't installed</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="ini"><span class="err" style="color: #a61717; background-color: #e3d2d2;">Test::Compile.skip</span><span class="nn" style="color: #555;">[0]</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">Bio::DB::SeqFeature::Store::DBI::Pg</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="ini"><span class="err" style="color: #a61717; background-color: #e3d2d2;">Test::Compile.skip</span><span class="nn" style="color: #555;">[1]</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">Bio::DB::SeqFeature::Store::DBI::SQLite</span></span></pre>
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<li id="07da4782d6598d284c394afa1beb735a9fd22282">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#07da4782d6598d284c394afa1beb735a9fd22282"><strong>lib/Bio/DB/SeqFeature.pm</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::</span><span class="nv" style="color: #008080;">SeqFeature</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"></span>
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<li id="bfe07ac2afd203609b761d3ed902fdb2918dd0cb">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#bfe07ac2afd203609b761d3ed902fdb2918dd0cb"><strong>lib/Bio/DB/SeqFeature/NormalizedFeature.pm</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::</span><span class="nv" style="color: #008080;">NormalizedFeature</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::NormalizedFeature::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::NormalizedFeature::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"></span>
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<li id="d14db3efe15292ddbe3a781114c3e19f7a056ffa">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#d14db3efe15292ddbe3a781114c3e19f7a056ffa"><strong>lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::</span><span class="nv" style="color: #008080;">NormalizedFeatureI</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::NormalizedFeatureI::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::NormalizedFeatureI::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<li id="4223e56275f2cbdbd96a53d82991dcb84ce9b6dd">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#4223e56275f2cbdbd96a53d82991dcb84ce9b6dd"><strong>lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::</span><span class="nv" style="color: #008080;">NormalizedTableFeatureI</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::NormalizedTableFeatureI::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::NormalizedTableFeatureI::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#381cfcc966cf4a3cd94427536ecaaad48240500a"><strong>lib/Bio/DB/SeqFeature/Segment.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::</span><span class="nv" style="color: #008080;">Segment</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Segment::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Segment::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#331afd0bc32c94d5d9542b9d8ae62e5c6753404d"><strong>lib/Bio/DB/SeqFeature/Store.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::</span><span class="nv" style="color: #008080;">Store</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<pre style="margin: 0;"> <span id="LC2713" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::</span><span class="nv" style="color: #008080;">FeatureIterator</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2714" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::FeatureIterator::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2714" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::FeatureIterator::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC2715" class="line" lang="perl"><span class="k" style="font-weight: 600;">sub </span><span class="nf" style="color: #900; font-weight: 600;">new</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC2716" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$self</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">shift</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC2717" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">@features</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">@_</span><span class="p">;</span></span>
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<li id="d984605e490b9dac6a9a8c1da5e9c17cd2750bf9">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#d984605e490b9dac6a9a8c1da5e9c17cd2750bf9"><strong>lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::</span><span class="nv" style="color: #008080;">Iterator</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::Iterator::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::Iterator::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"></span>
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<li id="c417b73737c9e5386f9c3d2af22c98c703c14850">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#c417b73737c9e5386f9c3d2af22c98c703c14850"><strong>lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::</span><span class="nv" style="color: #008080;">Pg</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::Pg::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.3</span><span class="p">';</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">DBD::</span><span class="nv" style="color: #008080;">Pg</span> <span class="sx" style="color: #d14;">qw(:pg_types)</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">MIME::</span><span class="nv" style="color: #008080;">Base64</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># $Id: Pg.pm 14656 2008-04-14 15:05:37Z lstein $</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">Bio::DB::SeqFeature::Store::DBI::Pg -- PostgreSQL implementation of Bio::DB::SeqFeature::Store</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -153,11 +146,15 @@ sections.</td>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=cut</span></span>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="perl"></span>
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::</span><span class="nv" style="color: #008080;">Pg</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::Pg::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.4</span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">strict</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">base</span> <span class="p">'</span><span class="s1" style="color: #d14;">Bio::DB::SeqFeature::Store::DBI::mysql</span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">MIME::</span><span class="nv" style="color: #008080;">Base64</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::</span><span class="nv" style="color: #008080;">Iterator</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">DBI</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">DBD::</span><span class="nv" style="color: #008080;">Pg</span> <span class="sx" style="color: #d14;">qw(:pg_types)</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">Memoize</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">Cwd</span> <span class="p">'</span><span class="s1" style="color: #d14;">abs_path</span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Bio::DB::GFF::Util::</span><span class="nv" style="color: #008080;">Rearrange</span> <span class="p">'</span><span class="s1" style="color: #d14;">rearrange</span><span class="p">';</span></span>
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<li id="305c2c7164104ffeecf74c430fe38c7a1d8915cf">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#305c2c7164104ffeecf74c430fe38c7a1d8915cf"><strong>lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::</span><span class="nv" style="color: #008080;">SQLite</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::SQLite::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::SQLite::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#$Id$</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#2787b37a58260cc5c2609a9a64bb91c0be33c68d"><strong>lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::</span><span class="nv" style="color: #008080;">mysql</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::mysql::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::DBI::mysql::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">Bio::DB::SeqFeature::Store::DBI::mysql -- Mysql implementation of Bio::DB::SeqFeature::Store</span></span>
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<li id="02c8ff2c104b3e4682a8393e55e66c9b54bd1485">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#02c8ff2c104b3e4682a8393e55e66c9b54bd1485"><strong>lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::</span><span class="nv" style="color: #008080;">FeatureFileLoader</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::FeatureFileLoader::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::FeatureFileLoader::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<li id="c1de5c6353dc89cf8732ff0483f6807d833a888f">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#c1de5c6353dc89cf8732ff0483f6807d833a888f"><strong>lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::</span><span class="nv" style="color: #008080;">GFF2Loader</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::GFF2Loader::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::GFF2Loader::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># $Id: GFF2Loader.pm 11755 2007-11-08 02:19:29Z cjfields $</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<li id="fab887d559823b66727f671ef1a74e5bc890662f">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#fab887d559823b66727f671ef1a74e5bc890662f"><strong>lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::</span><span class="nv" style="color: #008080;">GFF3Loader</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::GFF3Loader::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::GFF3Loader::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"></span>
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<li id="dfd15a9e6d01787f1cf3dcb4be8c2ee7288f538e">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#dfd15a9e6d01787f1cf3dcb4be8c2ee7288f538e"><strong>lib/Bio/DB/SeqFeature/Store/Loader.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::</span><span class="nv" style="color: #008080;">Loader</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::Loader::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::Loader::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"></span>
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<li id="2932ac8277b3ea1932411477718943a1aa7af623">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#2932ac8277b3ea1932411477718943a1aa7af623"><strong>lib/Bio/DB/SeqFeature/Store/bdb.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::</span><span class="nv" style="color: #008080;">bdb</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::bdb::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::bdb::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"></span>
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<li id="cc91de02ad60d5aaf851235c1c3c3cd75606b65e">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#cc91de02ad60d5aaf851235c1c3c3cd75606b65e"><strong>lib/Bio/DB/SeqFeature/Store/berkeleydb.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::</span><span class="nv" style="color: #008080;">berkeleydb</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::berkeleydb::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::berkeleydb::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">strict</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">base</span> <span class="p">'</span><span class="s1" style="color: #d14;">Bio::DB::SeqFeature::Store</span><span class="p">';</span></span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Bio::DB::GFF::Util::</span><span class="nv" style="color: #008080;">Rearrange</span> <span class="p">'</span><span class="s1" style="color: #d14;">rearrange</span><span class="p">';</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1510,7 +1510,7 @@ sub _featurecount {</td>
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<td class="diff-line-num new_line" data-linenumber="1510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1510
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<pre style="margin: 0;"> <span id="LC1510" class="line" lang="perl"></span>
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<td class="diff-line-num old_line" data-linenumber="1511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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1511
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<pre style="margin: 0;"> <span id="LC1511" class="line" lang="perl"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="1512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC1512" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::berkeleydb::</span><span class="nv" style="color: #008080;">Iterator</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1513
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<pre style="margin: 0;">-<span id="LC1513" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::berkeleydb::Iterator::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1513" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::berkeleydb::Iterator::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<td class="diff-line-num old_line" data-linenumber="1514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="1514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC1514" class="line" lang="perl"><span class="k" style="font-weight: 600;">sub </span><span class="nf" style="color: #900; font-weight: 600;">new</span> <span class="p">{</span></span>
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<td class="diff-line-num old_line" data-linenumber="1515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1515
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<td class="diff-line-num new_line" data-linenumber="1515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1515
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<pre style="margin: 0;"> <span id="LC1515" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$class</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">shift</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="1516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="1516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1516
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<pre style="margin: 0;"> <span id="LC1516" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$store</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">shift</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1529,7 +1529,7 @@ sub next_seq {</td>
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1529
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1529
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<pre style="margin: 0;"> <span id="LC1529" class="line" lang="perl"></span>
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<td class="diff-line-num old_line" data-linenumber="1530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="1530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1530
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<pre style="margin: 0;"> <span id="LC1530" class="line" lang="perl"></span>
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<td class="diff-line-num old_line" data-linenumber="1531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="1531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC1531" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::Fasta::</span><span class="nv" style="color: #008080;">Subdir</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1532" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::Fasta::Subdir::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1532" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::Fasta::Subdir::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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1533
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<td class="diff-line-num new_line" data-linenumber="1533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC1533" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">base</span> <span class="p">'</span><span class="s1" style="color: #d14;">Bio::DB::Fasta</span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC1534" class="line" lang="perl"></span>
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<td class="diff-line-num old_line" data-linenumber="1535" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC1535" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># alter calling arguments so that the index file is placed in a subdirectory</span></span>
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<li id="74ed0c74952ad88c771ce8baf101264122cda157">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#74ed0c74952ad88c771ce8baf101264122cda157"><strong>lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::</span><span class="nv" style="color: #008080;">berkeleydb3</span><span class="p">;</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::berkeleydb3::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::berkeleydb3::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># $Id: berkeleydb3.pm 15987 2009-08-18 21:08:55Z lstein $</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># faster implementation of berkeleydb</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"></span>
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<li id="640ac1655aaeeaadf8b8782cb5e60929f8457950">
<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#640ac1655aaeeaadf8b8782cb5e60929f8457950"><strong>lib/Bio/DB/SeqFeature/Store/memory.pm</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::</span><span class="nv" style="color: #008080;">memory</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::memory::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::memory::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">=head1 NAME</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"><span class="cm" style="color: #998; font-style: italic;">Bio::DB::SeqFeature::Store::memory -- In-memory implementation of Bio::DB::SeqFeature::Store</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -122,6 +122,7 @@ will be lost when the script exits.</td>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">strict</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">base</span> <span class="p">'</span><span class="s1" style="color: #d14;">Bio::DB::SeqFeature::Store</span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::</span><span class="nv" style="color: #008080;">GFF3Loader</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Bio::DB::GFF::</span><span class="nv" style="color: #008080;">Typename</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Bio::DB::GFF::Util::</span><span class="nv" style="color: #008080;">Rearrange</span> <span class="p">'</span><span class="s1" style="color: #d14;">rearrange</span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">File::</span><span class="nv" style="color: #008080;">Temp</span> <span class="p">'</span><span class="s1" style="color: #d14;">tempdir</span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">IO::</span><span class="nv" style="color: #008080;">File</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC673" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC674" class="line" lang="perl"><span class="k" style="font-weight: 600;">sub </span><span class="nf" style="color: #900; font-weight: 600;">types</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC675" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$self</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">shift</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC675" class="line" lang="perl"> <span class="nb" style="color: #0086b3;">eval</span> <span class="p">"</span><span class="s2" style="color: #d14;">require Bio::DB::GFF::Typename</span><span class="p">"</span> <span class="k" style="font-weight: 600;">unless</span> <span class="nn" style="color: #555;">Bio::DB::GFF::</span><span class="nv" style="color: #008080;">Typename</span><span class="o" style="font-weight: 600;">-></span><span class="nv" style="color: #008080;">can</span><span class="p">('</span><span class="s1" style="color: #d14;">new</span><span class="p">');</span></span>
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<pre style="margin: 0;"> <span id="LC676" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">@types</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC677" class="line" lang="perl"> <span class="k" style="font-weight: 600;">for</span> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$primary_tag</span> <span class="p">(</span> <span class="nb" style="color: #0086b3;">keys</span> <span class="o" style="font-weight: 600;">%</span><span class="p">{</span><span class="nv" style="color: #008080;">$$self</span><span class="p">{</span><span class="nv" style="color: #008080;">_index</span><span class="p">}{</span><span class="nv" style="color: #008080;">type</span><span class="p">}}</span> <span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC678" class="line" lang="perl"> <span class="k" style="font-weight: 600;">for</span> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$source_tag</span> <span class="p">(</span> <span class="nb" style="color: #0086b3;">keys</span> <span class="o" style="font-weight: 600;">%</span><span class="p">{</span><span class="nv" style="color: #008080;">$$self</span><span class="p">{</span><span class="nv" style="color: #008080;">_index</span><span class="p">}{</span><span class="nv" style="color: #008080;">type</span><span class="p">}{</span><span class="nv" style="color: #008080;">$primary_tag</span><span class="p">}}</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -750,7 +750,7 @@ sub _seq_ids {</td>
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<pre style="margin: 0;"> <span id="LC750" class="line" lang="perl"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC751" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC752" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::memory::</span><span class="nv" style="color: #008080;">Iterator</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC753" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::memory::Iterator::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC753" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SeqFeature::Store::memory::Iterator::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC754" class="line" lang="perl"><span class="k" style="font-weight: 600;">sub </span><span class="nf" style="color: #900; font-weight: 600;">new</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC755" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="p">(</span><span class="nv" style="color: #008080;">$class</span><span class="p">,</span> <span class="nv" style="color: #008080;">$store</span><span class="p">,</span> <span class="nv" style="color: #008080;">$ids</span><span class="p">)</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">@_</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC756" class="line" lang="perl"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">bless</span> <span class="p">{</span><span class="nv" style="color: #008080;">store</span> <span class="o" style="font-weight: 600;">=></span> <span class="nv" style="color: #008080;">$store</span><span class="p">,</span></span>
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<a href="https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/compare/cebe542a7c24faa17ec207177744471e998d6be7...43454a2c32ff7ba33569402b6ee2678ee1e1d25f#8866fb8e79987009d229877b1a0014451997870d"><strong>t/00-compile.t</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,7 @@ use warnings;</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Test::</span><span class="nv" style="color: #008080;">More</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="perl"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="perl"><span class="nv" style="color: #008080;">plan</span> <span class="nv" style="color: #008080;">tests</span> <span class="o" style="font-weight: 600;">=></span> <span class="mi" style="color: #099;">2<span class="idiff left right">2</span></span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="nv" style="color: #008080;">$ENV</span><span class="p">{</span><span class="nv" style="color: #008080;">AUTHOR_TESTING</span><span class="p">}</span> <span class="p">?</span> <span class="mi" style="color: #099;">1</span> <span class="p">:</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="perl"><span class="nv" style="color: #008080;">plan</span> <span class="nv" style="color: #008080;">tests</span> <span class="o" style="font-weight: 600;">=></span> <span class="mi" style="color: #099;">2<span class="idiff left right">0</span></span> <span class="o" style="font-weight: 600;">+</span> <span class="p">(</span><span class="nv" style="color: #008080;">$ENV</span><span class="p">{</span><span class="nv" style="color: #008080;">AUTHOR_TESTING</span><span class="p">}</span> <span class="p">?</span> <span class="mi" style="color: #099;">1</span> <span class="p">:</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">@module_files</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="perl"> <span class="p">'</span><span class="s1" style="color: #d14;">Bio/DB/SeqFeature.pm</span><span class="p">',</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,8 +16,6 @@ my @module_files = (</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="perl"> <span class="p">'</span><span class="s1" style="color: #d14;">Bio/DB/SeqFeature/Segment.pm</span><span class="p">',</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="perl"> <span class="p">'</span><span class="s1" style="color: #d14;">Bio/DB/SeqFeature/Store.pm</span><span class="p">',</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="perl"> <span class="p">'</span><span class="s1" style="color: #d14;">Bio/DB/SeqFeature/Store/DBI/Iterator.pm</span><span class="p">',</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="perl"> <span class="p">'</span><span class="s1" style="color: #d14;">Bio/DB/SeqFeature/Store/DBI/Pg.pm</span><span class="p">',</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="perl"> <span class="p">'</span><span class="s1" style="color: #d14;">Bio/DB/SeqFeature/Store/DBI/SQLite.pm</span><span class="p">',</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="perl"> <span class="p">'</span><span class="s1" style="color: #d14;">Bio/DB/SeqFeature/Store/DBI/mysql.pm</span><span class="p">',</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="perl"> <span class="p">'</span><span class="s1" style="color: #d14;">Bio/DB/SeqFeature/Store/FeatureFileLoader.pm</span><span class="p">',</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="perl"> <span class="p">'</span><span class="s1" style="color: #d14;">Bio/DB/SeqFeature/Store/GFF2Loader.pm</span><span class="p">',</span></span>
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