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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/commit/d7da8052bbd99ca7dfec66f70c0165a976c81a46">d7da8052</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-13T20:46:35+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">use ld.gold
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/commit/87a16edd4b62c2a2a56bde039b5e6b00825f065b">87a16edd</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-13T20:46:54+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">0.9.29+dfsg-3
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#1a7530a63305f1b18ca6f436ae59393c470803b9">
debian/patches/multi_arch
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/diamond-aligner/compare/e60db68ca1e63fe7938ace1d5776d9e2cb751592...87a16edd4b62c2a2a56bde039b5e6b00825f065b#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">diamond-aligner (0.9.29+dfsg-3) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">diamond-aligner (0.9.29+dfsg-3) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * patch to enable non-x86 builds again (no -msse, etc..)</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Closes: #942850</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 13 Jan 2020 1<span class="idiff left right">7:11:06</span> +0100</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 13 Jan 2020 1<span class="idiff left right">9:34:04</span> +0100</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">diamond-aligner (0.9.29+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<li id="1a7530a63305f1b18ca6f436ae59393c470803b9">
<a href="https://salsa.debian.org/med-team/diamond-aligner/compare/e60db68ca1e63fe7938ace1d5776d9e2cb751592...87a16edd4b62c2a2a56bde039b5e6b00825f065b#1a7530a63305f1b18ca6f436ae59393c470803b9"><strong>debian/patches/multi_arch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,7 +23,7 @@ Subject: handle non-x86 builds again</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"> add_executable(diamond $<TARGET_OBJECTS:arch_generic></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"> $<TARGET_OBJECTS:arch_sse4_1></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"> src/run/main.cpp</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"><span class="p">@@ -149,6 +153,9<span class="idiff left right">1</span> @@</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="p">@@ -149,6 +153,9<span class="idiff left right">2</span> @@</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="diff"> src/lib/tantan/LambdaCalculator.cc</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="diff"> src/data/taxonomy_filter.cpp</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"> )</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -111,6 +111,7 @@ Subject: handle non-x86 builds again</td>
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ src/util/math/sparse_matrix.cpp</span></span>
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112
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ src/lib/tantan/LambdaCalculator.cc</span></span>
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113
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ src/data/taxonomy_filter.cpp</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+)</span></span>
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114
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115
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+endif()</span></span>
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115
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116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="diff"> </span>
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116
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117
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="diff"> if(EXTRA)</span>
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<a href="https://salsa.debian.org/med-team/diamond-aligner/compare/e60db68ca1e63fe7938ace1d5776d9e2cb751592...87a16edd4b62c2a2a56bde039b5e6b00825f065b#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,7 +8,11 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+all</td>
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8
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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10
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">ifneq (,$(filter(DEB_HOST_ARCH),i386 amd64))</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">export LD=ld.gold</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">export DEB_CFLAGS_MAINT_APPEND+=-fuse-ld=gold</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">export DEB_CXXFLAGS_MAINT_APPEND+=-fuse-ld=gold</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">ifeq (,$(filter $(DEB_HOST_ARCH),amd64 i386))</span>
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12
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> EXTRA=-DX86=OFF</span>
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13
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">endif</span>
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14
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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