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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/blasr">Debian Med / blasr</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/blasr/commit/9dddbfce55ba1defd69520d3cc65afddf95755c9">9dddbfce</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-15T11:16:50+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-Depends: s/python/python3/
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/blasr/commit/18a705b7a08e9a1577340a20067913970f7f2889">18a705b7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-15T11:17:14+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.4.1
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</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/blasr/commit/5c9b0f15e5aea6043198a6e93cb136cc12dd5850">5c9b0f15</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-15T11:23:39+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-Depends: cmake
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/blasr/commit/a6c22aa349a5a115c72b2647b8d128eee58c457e">a6c22aa3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-15T15:19:22+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not check for pbbam with meson - its ensured by Build-Depends; Build-Depends: libpbcopper-dev
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#699a148889746a2dddf1a6e242a965a12b1f270d">
debian/patches/use_debian_packaged_pblibs.patch
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</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/blasr/compare/61a9321fd3e29b1e6c05346bff234f8cdf082ed9...a6c22aa349a5a115c72b2647b8d128eee58c457e#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">blasr (5.3.3+dfsg-3) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Build-Depends: s/python/python3/</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Standards-Version: 4.4.1</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Build-Depends: cmake</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Do not check for pbbam with meson - its ensured by Build-Depends</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Build-Depends: libpbcopper-dev</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 15 Jan 2020 11:16:19 +0100</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">blasr (5.3.3+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Use 2to3 to port to Python3</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/blasr/compare/61a9321fd3e29b1e6c05346bff234f8cdf082ed9...a6c22aa349a5a115c72b2647b8d128eee58c457e#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,8 +4,9 @@ Uploaders: Andreas Tille <tille@debian.org></td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 12),</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> python,</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> python<span class="idiff left right">3</span>,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> meson,</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> cmake,</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> pkg-config,</span>
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10
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> libboost-dev,</span>
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11
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> libhdf5-dev,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,9 +14,10 @@ Build-Depends: debhelper-compat (= 12),</td>
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13
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> libpbseq-dev,</span>
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14
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> libpbbam-dev (>= 0.18.0~),</span>
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15
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> libpbdata-dev,</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> libpbcopper-dev,</span>
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16
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> libgtest-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
17
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> libblasr-dev (>= 5.3.1+dfsg-2)</span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">Standards-Version: 4.4.<span class="idiff left right">0</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Standards-Version: 4.4.<span class="idiff left right">1</span></span>
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19
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/blasr</span>
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20
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/blasr.git</span>
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21
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Homepage: https://github.com/PacificBiosciences/blasr</span>
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<br>
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<li id="699a148889746a2dddf1a6e242a965a12b1f270d">
<a href="https://salsa.debian.org/med-team/blasr/compare/61a9321fd3e29b1e6c05346bff234f8cdf082ed9...a6c22aa349a5a115c72b2647b8d128eee58c457e#699a148889746a2dddf1a6e242a965a12b1f270d"><strong>debian/patches/use_debian_packaged_pblibs.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,7 +9,7 @@ Description: Add some missing libraries to linker</td>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> </span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> # pbbam</span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-blasr_pbbam_dep = dependency('pbbam', fallback : ['pbbam', 'pbbam_dep'])</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+blasr_pbbam_dep = dependency('pbbam', required : true)</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+<span class="idiff left right"># </span>blasr_pbbam_dep = dependency('pbbam', required : true)</span></span>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> # libblasr</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-blasr_libblasr_dep = dependency('libblasr', fallback : ['blasr_libcpp', 'libblasr_dep'])</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,7 +23,7 @@ Description: Add some missing libraries to linker</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+samwriter_pbdata_deps = cpp.find_library('pbdata')</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+blasr_pbihdf_deps = cpp.find_library('pbihdf')</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+blasr_deps = [blasr_thread_dep, blasr_boost_dep, blasr_<span class="idiff left right">pbbam_dep, blasr_</span>libblasr_dep, blasr_zlib_dep, samwriter_pbdata_deps, blasr_pbihdf_deps]</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+blasr_deps = [blasr_thread_dep, blasr_boost_dep, blasr_libblasr_dep, blasr_zlib_dep, samwriter_pbdata_deps, blasr_pbihdf_deps]</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="diff"> ########################</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"> # sources + executable #</span></pre>
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