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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/kleborate">Debian Med / kleborate</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kleborate/commit/5751d0ab4e90cefb050255dff6763406241fe005">5751d0ab</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-15T21:44:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0.0</pre>
</li>
</ul>
<h4>21 changed files:</h4>
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<li class="file-stats">
<a href="#eff4cd4a1e08155d42c85e48787c9e4c288b8d02">
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.coveragerc
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<a href="#769737e9008203517b89eefb466bdd2daaa869a1">
<span class="deleted-file">
−
Kleborate_results.txt
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</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#fc67ee72de3ae7f948d1884931df995629bb7078">
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data/Genotyped_Isolates_Lam2017.txt
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data/README.md
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<li class="file-stats">
<a href="#c7e4d6e623edf41515983cb7deb9cb4eb8bc40cb">
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data/UK-IRE-MDR_Lam2017.txt
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<li class="file-stats">
<a href="#059fccfb206ce3ddf926d59a2bce1cb15cee490e">
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data/ncbi_genome_kleborate_results.txt
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<li class="file-stats">
<a href="#e1e171c63238fefcda245689954c1bd04b9e3f59">
images/species_tree.png
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<li class="file-stats">
<a href="#78dd066ff5587dce0473ff0d642f61972c4f2d51">
kleborate-runner.py
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<li class="file-stats">
<a href="#1980678d5be87999cc65f529cae0b9d149f0c08c">
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kleborate/blastn.py
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<a href="#e039b6cb6c190007e44a9cb41f09071fa8854cc2">
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kleborate/clusterBLAST.py
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<li class="file-stats">
<a href="#7c9d74be8a1517dbdbc9c538810c9334bb843517">
kleborate/contig_stats.py
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<li class="file-stats">
<a href="#d8911e4317d1c3beee8d3cf798369b82097e9e34">
kleborate/data/ARGannot_clustered80_r2.csv
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kleborate/data/ARGannot_clustered80_r3.csv
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<a href="#25b6c5ae55ff042c175be0413ce7613d15faf24d">
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kleborate/data/ARGannot_r2.fasta
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<a href="#19d773ca2c53634fdb4f3b8c5bcb78638784ebc4">
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kleborate/data/ARGannot_r3.fasta
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<li class="file-stats">
<a href="#8005dda3471b504fbb262c418a4274c3066e4aa4">
kleborate/data/Klebsiella_pneumoniae.fasta
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<li class="file-stats">
<a href="#da0d35f96e5b3267f58652ca38068d692919fce5">
<span class="deleted-file">
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kleborate/data/MgrB_and_PmrB.aa
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<a href="#745ec8fd9ae257928dfee14f8b76e14f8511f22e">
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kleborate/data/MgrB_and_PmrB.fasta
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<li class="file-stats">
<a href="#27b66204aef480178237e9e8699a6cc9c55213e6">
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kleborate/data/OmpK.fasta
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<li class="file-stats">
<a href="#38cc9d34b3ad5124f61b7f11c2968cc47f51ac74">
<span class="deleted-file">
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kleborate/data/QRDR_120.aa
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<a href="#9c69a2ecf6c9ef94e4e7cfbf6d308334ae63f495">
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kleborate/data/QRDR_120.fasta
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<h5>The diff was not included because it is too large.</h5>
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