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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/biomaj3-download">Debian Med / biomaj3-download</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948">f29ddc93</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-15T09:15:29+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.1.2</pre>
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<h4>12 changed files:</h4>
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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<li class="file-stats">
<a href="#3251d7a8143ce2e789f0468513df8f285f842c3a">
CHANGES.txt
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#6de5d4dfc17eee84d408fef86a6a7c8633565bca">
biomaj_download/download/curl.py
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<li class="file-stats">
<a href="#df5653d5031791e72480c39a18d003ef12827c31">
biomaj_download/download/direct.py
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<li class="file-stats">
<a href="#d3ff2f83abc07542528c70838015fdc7df5bb541">
biomaj_download/download/interface.py
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<li class="file-stats">
<a href="#63b39413137f9b80cf3fdef07da7062560aac6d3">
biomaj_download/download/protocolirods.py
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<li class="file-stats">
<a href="#1f07ba0e68071708cf960ca8e2db2e9c7b41a257">
biomaj_download/downloadservice.py
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<li class="file-stats">
<a href="#96244b2e4c509dd6d54048527316551e27dcc1cc">
biomaj_download/message/downmessage.proto
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<li class="file-stats">
<a href="#19e6b141e5be4adfd4186f5fe6c25fe5dd113c09">
biomaj_download/message/downmessage_pb2.py
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#a5b5d0c7b9c558d9142a199ec517b633dd40faf5">
tests/biomaj_tests.py
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<h4>Changes:</h4>
<li id="dea01dd89a3b602828e630677fde5d77c06441c8">
<a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948#dea01dd89a3b602828e630677fde5d77c06441c8"><strong>.travis.yml</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,9 +2,9 @@ language: python</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">sudo</span><span class="pi">:</span> <span class="no" style="color: #008080;">false</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="yaml"><span class="na" style="color: #008080;">python</span><span class="pi">:</span></span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="yaml"><span class="pi">-</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">2.7'</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="yaml"><span class="pi">-</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">3.4'</span></span>
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="yaml"><span class="pi">-</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">3.5'</span></span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="yaml"><span class="pi">-</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">3.6'</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="yaml"><span class="pi">-</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">3.7'</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="yaml"><span class="pi">-</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">3.8'</span></span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="yaml"><span class="na" style="color: #008080;">services</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="yaml"><span class="pi">-</span> <span class="s" style="color: #d14;">redis</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="yaml"><span class="na" style="color: #008080;">branches</span><span class="pi">:</span></span>
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<li id="3251d7a8143ce2e789f0468513df8f285f842c3a">
<a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948#3251d7a8143ce2e789f0468513df8f285f842c3a"><strong>CHANGES.txt</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">3.1.2:</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> #18 Add a protocol option to set CURLOPT_FTP_FILEMETHOD</span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> #19 Rename protocol options to options</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Fix copy of production files instead of download when files are in subdirectories</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">3.1.1:</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> #17 Support MDTM command in directftp</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">3.1.0:</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> #16 Don't change name after download in DirectHTTPDownloader</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> PR #7 Refactor downloaders (*WARNING* breaks API)</span>
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<a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d"><strong>README.md</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -58,3 +58,47 @@ If you cloned the repository and installed it via python setup.py install, just</td>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="markdown">Web processes should be behind a proxy/load balancer, API base url /api/download</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="markdown">Prometheus endpoint metrics are exposed via /metrics on web server</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="markdown"><span class="gh" style="color: #999;"># Download options</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="markdown">Since version 3.0.26, you can use the <span class="sb" style="color: #d14;">`set_options`</span> method to pass a dictionary of downloader-specific options.</span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="markdown">The following list shows some options and their effect (the option to set is the key and the parameter is the associated value):</span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="markdown"><span class="p"> *</span> <span class="gs" style="font-weight: 600;">**skip_check_uncompress**</span>:</span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="markdown"><span class="p"> *</span> parameter: bool.</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="markdown"><span class="p"> *</span> downloader(s): all.</span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="markdown"><span class="p"> *</span> effect: If true, don't test the archives after download.</span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="markdown"><span class="p"> *</span> default: false (i.e. test the archives).</span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="markdown"><span class="p"> *</span> <span class="gs" style="font-weight: 600;">**ssl_verifyhost**</span>:</span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="markdown"><span class="p"> *</span> parameter: bool.</span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="markdown"><span class="p"> *</span> downloader(s): <span class="sb" style="color: #d14;">`CurlDownloader`</span>, <span class="sb" style="color: #d14;">`DirectFTPDownload`</span>, <span class="sb" style="color: #d14;">`DirectHTTPDownload`</span>.</span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="markdown"><span class="p"> *</span> effect: If false, don't check that the name of the remote server is the same than in the SSL certificate.</span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="markdown"><span class="p"> *</span> default: true (i.e. check host name).</span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="markdown"><span class="p"> *</span> note: It's generally a bad idea to disable this verification. However some servers are badly configured. See <span class="p">[</span><span class="nv" style="color: #008080;">here</span><span class="p">](</span><span class="sx" style="color: #d14;">https://curl.haxx.se/libcurl/c/CURLOPT_SSL_VERIFYHOST.html</span><span class="p">)</span> for the corresponding cURL option.</span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="markdown"><span class="p"> *</span> <span class="gs" style="font-weight: 600;">**ssl_verifypeer**</span>:</span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="markdown"><span class="p"> *</span> parameter: bool.</span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="markdown"><span class="p"> *</span> downloader(s): <span class="sb" style="color: #d14;">`CurlDownloader`</span>, <span class="sb" style="color: #d14;">`DirectFTPDownload`</span>, <span class="sb" style="color: #d14;">`DirectHTTPDownload`</span>.</span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="markdown"><span class="p"> *</span> effect: If false, don't check the authenticity of the peer's certificate.</span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="markdown"><span class="p"> *</span> default: true (i.e. check authenticity).</span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="markdown"><span class="p"> *</span> note: It's generally a bad idea to disable this verification. However some servers are badly configured. See <span class="p">[</span><span class="nv" style="color: #008080;">here</span><span class="p">](</span><span class="sx" style="color: #d14;">https://curl.haxx.se/libcurl/c/CURLOPT_SSL_VERIFYPEER.html</span><span class="p">)</span> for the corresponding cURL option.</span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="markdown"><span class="p"> *</span> <span class="gs" style="font-weight: 600;">**ssl_server_cert**</span>:</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="markdown"><span class="p"> *</span> parameter: filename of the certificate.</span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="markdown"><span class="p"> *</span> downloader(s): <span class="sb" style="color: #d14;">`CurlDownloader`</span>, <span class="sb" style="color: #d14;">`DirectFTPDownload`</span>, <span class="sb" style="color: #d14;">`DirectHTTPDownload`</span>.</span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="markdown"><span class="p"> *</span> effect: Pass a file holding one or more certificates to verify the peer with.</span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="markdown"><span class="p"> *</span> default: use OS certificates.</span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="markdown"><span class="p"> *</span> note: See <span class="p">[</span><span class="nv" style="color: #008080;">here</span><span class="p">](</span><span class="sx" style="color: #d14;">https://curl.haxx.se/libcurl/c/CURLOPT_CAINFO.html</span><span class="p">)</span> for the corresponding cURL option.</span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="markdown"><span class="p"> *</span> <span class="gs" style="font-weight: 600;">**tcp_keepalive**</span>:</span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="markdown"><span class="p"> *</span> parameter: int.</span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="markdown"><span class="p"> *</span> downloader(s): <span class="sb" style="color: #d14;">`CurlDownloader`</span>, <span class="sb" style="color: #d14;">`DirectFTPDownload`</span>, <span class="sb" style="color: #d14;">`DirectHTTPDownload`</span>.</span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="markdown"><span class="p"> *</span> effect: Sets the interval, in seconds, that the operating system will wait between sending keepalive probes.</span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="markdown"><span class="p"> *</span> default: cURL default (60s at the time of this writing).</span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="markdown"><span class="p"> *</span> note: See <span class="p">[</span><span class="nv" style="color: #008080;">here</span><span class="p">](</span><span class="sx" style="color: #d14;">https://curl.haxx.se/libcurl/c/CURLOPT_TCP_KEEPINTVL.html</span><span class="p">)</span> for the corresponding cURL option.</span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="markdown"><span class="p"> *</span> <span class="gs" style="font-weight: 600;">**ftp_method**</span>:</span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="markdown"><span class="p"> *</span> parameter: one of <span class="sb" style="color: #d14;">`default`</span>, <span class="sb" style="color: #d14;">`multicwd`</span>, <span class="sb" style="color: #d14;">`nocwd`</span>, <span class="sb" style="color: #d14;">`singlecwd`</span> (case insensitive).</span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="markdown"><span class="p"> *</span> downloader(s): <span class="sb" style="color: #d14;">`CurlDownloader`</span>, <span class="sb" style="color: #d14;">`DirectFTPDownload`</span>, <span class="sb" style="color: #d14;">`DirectHTTPDownload`</span>.</span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="markdown"><span class="p"> *</span> effect: Sets the method to use to reach a file on a FTP(S) server (<span class="sb" style="color: #d14;">`nocwd`</span> and <span class="sb" style="color: #d14;">`singlecwd`</span> are usually faster but not always supported).</span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="markdown"><span class="p"> *</span> default: <span class="sb" style="color: #d14;">`default`</span> (which is <span class="sb" style="color: #d14;">`multicwd`</span> at the time of this writing)</span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="markdown"><span class="p"> *</span> note: See <span class="p">[</span><span class="nv" style="color: #008080;">here</span><span class="p">](</span><span class="sx" style="color: #d14;">https://curl.haxx.se/libcurl/c/CURLOPT_FTP_FILEMETHOD.html</span><span class="p">)</span> for the corresponding cURL option.</span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="markdown">Those options can be set in bank properties.</span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="markdown">See file <span class="sb" style="color: #d14;">`global.properties.example`</span> in <span class="p">[</span><span class="nv" style="color: #008080;">biomaj module</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/genouest/biomaj</span><span class="p">)</span>.</span></pre>
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<li id="6de5d4dfc17eee84d408fef86a6a7c8633565bca">
<a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948#6de5d4dfc17eee84d408fef86a6a7c8633565bca"><strong>biomaj_download/download/curl.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -113,6 +113,14 @@ class CurlDownload(DownloadInterface):</td>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="python"> <span class="n" style="color: #333;">ftputil</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">stat</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">MSParser</span><span class="p">(),</span></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="python"> <span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Valid values for ftp_method options as string and int</span></span>
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="python"> <span class="n" style="color: #333;">VALID_FTP_FILEMETHOD</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="python"> <span class="s" style="color: #d14;">"default"</span><span class="p">:</span> <span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FTPMETHOD_DEFAULT</span><span class="p">,</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="python"> <span class="s" style="color: #d14;">"multicwd"</span><span class="p">:</span> <span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FTPMETHOD_MULTICWD</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="python"> <span class="s" style="color: #d14;">"nocwd"</span><span class="p">:</span> <span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FTPMETHOD_NOCWD</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="python"> <span class="s" style="color: #d14;">"singlecwd"</span><span class="p">:</span> <span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FTPMETHOD_SINGLECWD</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="python"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__init__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">curl_protocol</span><span class="p">,</span> <span class="n" style="color: #333;">host</span><span class="p">,</span> <span class="n" style="color: #333;">rootdir</span><span class="p">,</span> <span class="n" style="color: #333;">http_parse</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="python"><span class="s" style="color: #d14;"> Initialize a CurlDownloader.</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -162,7 +170,9 @@ class CurlDownload(DownloadInterface):</td>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># This object is shared by all operations to use the cache.</span></span>
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Before using it, call method:`_basic_curl_configuration`.</span></span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Curl</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Initialize options</span></span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">#</span></span>
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166
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Should we skip SSL verification (cURL -k/--insecure option)</span></span>
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167
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ssl_verifyhost</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span></span>
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168
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ssl_verifypeer</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -170,6 +180,8 @@ class CurlDownload(DownloadInterface):</td>
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170
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ssl_server_cert</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Keep alive</span></span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">tcp_keepalive</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span></span>
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># FTP method (cURL --ftp-method option)</span></span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ftp_method</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FTPMETHOD_DEFAULT</span> <span class="c1" style="color: #998; font-style: italic;"># Use cURL default</span></span>
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">_basic_curl_configuration</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -208,6 +220,9 @@ class CurlDownload(DownloadInterface):</td>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># CURLOPT_CAPATH is for a directory of certificates.</span></span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">setopt</span><span class="p">(</span><span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">CAINFO</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ssl_server_cert</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Configure ftp method</span></span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">setopt</span><span class="p">(</span><span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FTP_FILEMETHOD</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ftp_method</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="python"></span>
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211
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Configure timeouts</span></span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">setopt</span><span class="p">(</span><span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">CONNECTTIMEOUT</span><span class="p">,</span> <span class="mi" style="color: #099;">300</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">setopt</span><span class="p">(</span><span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TIMEOUT</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">timeout</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -248,16 +263,23 @@ class CurlDownload(DownloadInterface):</td>
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">CurlDownload</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">set_server</span><span class="p">(</span><span class="n" style="color: #333;">server</span><span class="p">)</span></span>
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249
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">curl_protocol</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">'://'</span> <span class="o" style="font-weight: 600;">+</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">server</span></span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC251" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">set_options</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">protocol_options</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">CurlDownload</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">set_options</span><span class="p">(</span><span class="n" style="color: #333;">protocol_options</span><span class="p">)</span></span>
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253
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<pre style="margin: 0;">-<span id="LC253" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"ssl_verifyhost"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">protocol_options</span><span class="p">:</span></span>
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254
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<pre style="margin: 0;">-<span id="LC254" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ssl_verifyhost</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Utils</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">to_bool</span><span class="p">(</span><span class="n" style="color: #333;">protocol_options</span><span class="p">[</span><span class="s" style="color: #d14;">"ssl_verifyhost"</span><span class="p">])</span></span>
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<pre style="margin: 0;">-<span id="LC255" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"ssl_verifypeer"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">protocol_options</span><span class="p">:</span></span>
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256
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<pre style="margin: 0;">-<span id="LC256" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ssl_verifypeer</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Utils</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">to_bool</span><span class="p">(</span><span class="n" style="color: #333;">protocol_options</span><span class="p">[</span><span class="s" style="color: #d14;">"ssl_verifypeer"</span><span class="p">])</span></span>
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257
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"ssl_server_cert"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">protocol_options</span><span class="p">:</span></span>
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258
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<pre style="margin: 0;">-<span id="LC258" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ssl_server_cert</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">protocol_options</span><span class="p">[</span><span class="s" style="color: #d14;">"ssl_server_cert"</span><span class="p">]</span></span>
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259
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"tcp_keepalive"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">protocol_options</span><span class="p">:</span></span>
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260
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">tcp_keepalive</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Utils</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">to_int</span><span class="p">(</span><span class="n" style="color: #333;">protocol_options</span><span class="p">[</span><span class="s" style="color: #d14;">"tcp_keepalive"</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">set_options</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">options</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="python"> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">CurlDownload</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">set_options</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">)</span></span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"ssl_verifyhost"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">options</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ssl_verifyhost</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Utils</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">to_bool</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">[</span><span class="s" style="color: #d14;">"ssl_verifyhost"</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"ssl_verifypeer"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">options</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ssl_verifypeer</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Utils</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">to_bool</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">[</span><span class="s" style="color: #d14;">"ssl_verifypeer"</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"ssl_server_cert"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">options</span><span class="p">:</span></span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ssl_server_cert</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">options</span><span class="p">[</span><span class="s" style="color: #d14;">"ssl_server_cert"</span><span class="p">]</span></span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"tcp_keepalive"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">options</span><span class="p">:</span></span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">tcp_keepalive</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Utils</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">to_int</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">[</span><span class="s" style="color: #d14;">"tcp_keepalive"</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"ftp_method"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">options</span><span class="p">:</span></span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># raw_val is a string which contains the name of the option as in the CLI.</span></span>
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278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># We always convert raw_val to a valid integer</span></span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="python"> <span class="n" style="color: #333;">raw_val</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">options</span><span class="p">[</span><span class="s" style="color: #d14;">"ftp_method"</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">lower</span><span class="p">()</span></span>
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280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">raw_val</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">VALID_FTP_FILEMETHOD</span><span class="p">:</span></span>
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281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">(</span><span class="s" style="color: #d14;">"Invalid value for ftp_method"</span><span class="p">)</span></span>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ftp_method</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">VALID_FTP_FILEMETHOD</span><span class="p">[</span><span class="n" style="color: #333;">raw_val</span><span class="p">]</span></span>
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261
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283
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="python"></span>
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262
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284
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">_append_file_to_download</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">rfile</span><span class="p">):</span></span>
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263
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285
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Add url and root to the file if needed (for safety)</span></span>
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<a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948#df5653d5031791e72480c39a18d003ef12827c31"><strong>biomaj_download/download/direct.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,6 +22,7 @@ import pycurl</td>
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">re</span></span>
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">hashlib</span></span>
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">os</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">biomaj_download.download.curl</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">CurlDownload</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">biomaj_core.utils</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Utils</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -76,11 +77,49 @@ class DirectFTPDownload(CurlDownload):</td>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">(</span><span class="n" style="color: #333;">msg</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">super</span><span class="p">(</span><span class="n" style="color: #333;">DirectFTPDownload</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">set_files_to_download</span><span class="p">(</span><span class="n" style="color: #333;">files_to_download</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">_file_url</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">rfile</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># rfile['root'] is set to self.rootdir if needed but may be different.</span></span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># We don't use os.path.join because rfile['name'] may starts with /</span></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">'/'</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">rfile</span><span class="p">[</span><span class="s" style="color: #d14;">'root'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">rfile</span><span class="p">[</span><span class="s" style="color: #d14;">'name'</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">list</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">directory</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">''</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="python"> <span class="s" style="color: #d14;">'''</span></span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="python"><span class="s" style="color: #d14;"> FTP protocol does not give us the possibility to get file date from remote url</span></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="python"><span class="s" style="color: #d14;"> '''</span></span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># TODO: are we sure about this implementation ?</span></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_basic_curl_configuration</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">rfile</span> <span class="ow" style="font-weight: 600;">in</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">files_to_download</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">save_as</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">save_as</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">basename</span><span class="p">(</span><span class="n" style="color: #333;">rfile</span><span class="p">[</span><span class="s" style="color: #d14;">'name'</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="python"> <span class="n" style="color: #333;">rfile</span><span class="p">[</span><span class="s" style="color: #d14;">'save_as'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">save_as</span></span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="python"> <span class="n" style="color: #333;">file_url</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_file_url</span><span class="p">(</span><span class="n" style="color: #333;">rfile</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">setopt</span><span class="p">(</span><span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">URL</span><span class="p">,</span> <span class="n" style="color: #333;">file_url</span><span class="p">)</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">Exception</span><span class="p">:</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">setopt</span><span class="p">(</span><span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">URL</span><span class="p">,</span> <span class="n" style="color: #333;">file_url</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">encode</span><span class="p">(</span><span class="s" style="color: #d14;">'ascii'</span><span class="p">,</span> <span class="s" style="color: #d14;">'ignore'</span><span class="p">))</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">setopt</span><span class="p">(</span><span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">URL</span><span class="p">,</span> <span class="n" style="color: #333;">file_url</span><span class="p">)</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">setopt</span><span class="p">(</span><span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">OPT_FILETIME</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">setopt</span><span class="p">(</span><span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">NOBODY</span><span class="p">,</span> <span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="python"></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Very old servers may not support the MDTM commands. Therefore,</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># cURL will raise an error. In that case, we simply skip the rest</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># of the function as it was done before. Download will work however.</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Note that if the file does not exist, it will be skipped too</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># (that was the case before too). Of course, download will fail in</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># this case.</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">perform</span><span class="p">()</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">Exception</span><span class="p">:</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="python"> <span class="k" style="font-weight: 600;">continue</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="python"></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="python"> <span class="n" style="color: #333;">timestamp</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">getinfo</span><span class="p">(</span><span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">INFO_FILETIME</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="python"> <span class="n" style="color: #333;">dt</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">datetime</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">datetime</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">fromtimestamp</span><span class="p">(</span><span class="n" style="color: #333;">timestamp</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="python"> <span class="n" style="color: #333;">size_file</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">int</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">crl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">getinfo</span><span class="p">(</span><span class="n" style="color: #333;">pycurl</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">CONTENT_LENGTH_DOWNLOAD</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="python"></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="python"> <span class="n" style="color: #333;">rfile</span><span class="p">[</span><span class="s" style="color: #d14;">'year'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">year</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="python"> <span class="n" style="color: #333;">rfile</span><span class="p">[</span><span class="s" style="color: #d14;">'month'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">month</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="python"> <span class="n" style="color: #333;">rfile</span><span class="p">[</span><span class="s" style="color: #d14;">'day'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">day</span></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="python"> <span class="n" style="color: #333;">rfile</span><span class="p">[</span><span class="s" style="color: #d14;">'size'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">size_file</span></span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="python"> <span class="n" style="color: #333;">rfile</span><span class="p">[</span><span class="s" style="color: #d14;">'hash'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">hashlib</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">md5</span><span class="p">(</span><span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">timestamp</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">encode</span><span class="p">(</span><span class="s" style="color: #d14;">'utf-8'</span><span class="p">))</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">hexdigest</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">files_to_download</span><span class="p">,</span> <span class="p">[])</span></span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">match</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">patterns</span><span class="p">,</span> <span class="n" style="color: #333;">file_list</span><span class="p">,</span> <span class="n" style="color: #333;">dir_list</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">prefix</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">''</span><span class="p">,</span> <span class="n" style="color: #333;">submatch</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">):</span></span>
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<a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948#d3ff2f83abc07542528c70838015fdc7df5bb541"><strong>biomaj_download/download/interface.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -68,7 +68,7 @@ class DownloadInterface(object):</td>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">server</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">offline_dir</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Options</span></span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;"><span class="idiff left">protocol_options</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">{}</span></span></span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;"><span class="idiff left">options</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="p"><span class="idiff">{}</span></span><span class="idiff"> </span><span class="c1" style="color: #998; font-style: italic;"><span class="idiff right"># This field is used to forge the download message</span></span></span>
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72
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">skip_check_uncompress</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">False</span></span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -128,16 +128,16 @@ class DownloadInterface(object):</td>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="python"><span class="s" style="color: #d14;"> '''</span></span>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">credentials</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">userpwd</span></span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">set_options</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left right">protocol_</span>options</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">set_options</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">options</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="python"><span class="s" style="color: #d14;"> Set <span class="idiff left right">protocol specific</span> options.</span></span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="python"><span class="s" style="color: #d14;"> Set <span class="idiff left right">download</span> options.</span></span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="python"><span class="s" style="color: #d14;"> Subclasses that override this method must call the</span></span>
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="python"><span class="s" style="color: #d14;"> parent implementation.</span></span>
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="python"><span class="s" style="color: #d14;"> Subclasses that override this method must call this implementation.</span></span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">protocol_options</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">protocol_options</span></span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"skip_check_uncompress"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">protocol_options</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">skip_check_uncompress</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Utils</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">to_bool</span><span class="p">(</span><span class="n" style="color: #333;">protocol_options</span><span class="p">[</span><span class="s" style="color: #d14;">"skip_check_uncompress"</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Copy the option dict</span></span>
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">options</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">options</span></span>
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">"skip_check_uncompress"</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">options</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">skip_check_uncompress</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Utils</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">to_bool</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">[</span><span class="s" style="color: #d14;">"skip_check_uncompress"</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># File operations (match, list, download) and associated hook methods</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -284,7 +284,10 @@ class DownloadInterface(object):</td>
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="python"> <span class="n" style="color: #333;">new_files_to_download</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">dfile</span><span class="p">)</span></span>
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285
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="python"> <span class="n" style="color: #333;">index</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span></span>
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286
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">check_exists</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">exists</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">root_dir</span><span class="p">,</span> <span class="n" style="color: #333;">dfile</span><span class="p">[</span><span class="s" style="color: #d14;">'name'</span><span class="p">])):</span></span>
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="python"> <span class="n" style="color: #333;">fileName</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dfile</span><span class="p">[</span><span class="s" style="color: #d14;">"name"</span><span class="p">]</span></span>
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288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">dfile</span><span class="p">[</span><span class="s" style="color: #d14;">"name"</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">startswith</span><span class="p">(</span><span class="s" style="color: #d14;">'/'</span><span class="p">):</span></span>
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289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="python"> <span class="n" style="color: #333;">fileName</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dfile</span><span class="p">[</span><span class="s" style="color: #d14;">"name"</span><span class="p">][</span><span class="mi" style="color: #099;">1</span><span class="p">:]</span></span>
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290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">check_exists</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">exists</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">root_dir</span><span class="p">,</span> <span class="n" style="color: #333;">fileName</span><span class="p">)):</span></span>
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288
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291
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="python"> <span class="n" style="color: #333;">dfile</span><span class="p">[</span><span class="s" style="color: #d14;">'root'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">root_dir</span></span>
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289
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292
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">debug</span><span class="p">(</span><span class="s" style="color: #d14;">'Copy file instead of downloading it: </span><span class="si" style="color: #d14;">%</span><span class="s" style="color: #d14;">s'</span> <span class="o" style="font-weight: 600;">%</span> <span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">root_dir</span><span class="p">,</span> <span class="n" style="color: #333;">dfile</span><span class="p">[</span><span class="s" style="color: #d14;">'name'</span><span class="p">])))</span></span>
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293
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">files_to_copy</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">dfile</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -293,7 +296,10 @@ class DownloadInterface(object):</td>
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296
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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294
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297
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Copy everything</span></span>
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295
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298
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">dfile</span> <span class="ow" style="font-weight: 600;">in</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">files_to_download</span><span class="p">:</span></span>
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296
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">check_exists</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">exists</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">root_dir</span><span class="p">,</span> <span class="n" style="color: #333;">dfile</span><span class="p">[</span><span class="s" style="color: #d14;">'name'</span><span class="p">])):</span></span>
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="python"> <span class="n" style="color: #333;">fileName</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dfile</span><span class="p">[</span><span class="s" style="color: #d14;">"name"</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">dfile</span><span class="p">[</span><span class="s" style="color: #d14;">"name"</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">startswith</span><span class="p">(</span><span class="s" style="color: #d14;">'/'</span><span class="p">):</span></span>
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301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="python"> <span class="n" style="color: #333;">fileName</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dfile</span><span class="p">[</span><span class="s" style="color: #d14;">"name"</span><span class="p">][</span><span class="mi" style="color: #099;">1</span><span class="p">:]</span></span>
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302
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">check_exists</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">exists</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">root_dir</span><span class="p">,</span> <span class="n" style="color: #333;">fileName</span><span class="p">)):</span></span>
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303
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="python"> <span class="n" style="color: #333;">dfile</span><span class="p">[</span><span class="s" style="color: #d14;">'root'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">root_dir</span></span>
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298
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304
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">files_to_copy</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">dfile</span><span class="p">)</span></span>
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299
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305
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948#63b39413137f9b80cf3fdef07da7062560aac6d3"><strong>biomaj_download/download/protocolirods.py</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">biomaj_download.download.interface</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">DownloadInterface</span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">irods.session</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">iRODSSession</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">irods.exception</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">iRODSException</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">irods.models</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">DataObject</span><span class="p">,</span> <span class="n" style="color: #333;">User</span></span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -73,17 +74,10 @@ class IRODSDownload(DownloadInterface):</td>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="python"> <span class="n" style="color: #333;">file_to_get</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rfile</span><span class="p">[</span><span class="s" style="color: #d14;">'root'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">"/"</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">rfile</span><span class="p">[</span><span class="s" style="color: #d14;">'name'</span><span class="p">]</span></span>
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74
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Write the file to download in the wanted file_dir with the</span></span>
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75
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76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># python-irods iget</span></span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="python"> <span class="n" style="color: #333;">obj</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">session</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">data_objects</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">file_to_get</span><span class="p">,</span> <span class="n" style="color: #333;">file_dir</span><span class="p">)</span></span>
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77
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="n" style="color: #333;">ExceptionIRODS</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">e</span><span class="p">:</span></span>
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78
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">error</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">__class__</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">":Download:Error:Can't get irods object "</span> <span class="o" style="font-weight: 600;">+</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">obj</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">error</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">__class__</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">":Download:Error:"</span> <span class="o" style="font-weight: 600;">+</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">e</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="python"> <span class="n" style="color: #333;">session</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">data_objects</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">file_to_get</span><span class="p">,</span> <span class="n" style="color: #333;">file_dir</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="n" style="color: #333;">iRODSException</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">e</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="python"> <span class="n" style="color: #333;">error</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">True</span></span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">error</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">__class__</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">":Download:Error:Can't get irods object "</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">file_to_get</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">error</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">__class__</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">":Download:Error:"</span> <span class="o" style="font-weight: 600;">+</span> <span class="nb" style="color: #0086b3;">repr</span><span class="p">(</span><span class="n" style="color: #333;">e</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="python"> <span class="n" style="color: #333;">session</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">cleanup</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span><span class="p">(</span><span class="n" style="color: #333;">error</span><span class="p">)</span></span></pre>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">ExceptionIRODS</span><span class="p">(</span><span class="nb" style="color: #0086b3;">Exception</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__init__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">exception_reason</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">exception_reason</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">exception_reason</span></span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__str__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">exception_reason</span></span></pre>
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<a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948#1f07ba0e68071708cf960ca8e2db2e9c7b41a257"><strong>biomaj_download/downloadservice.py</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -130,7 +130,7 @@ class DownloadService(object):</td>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="python"> <span class="n" style="color: #333;">credentials</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">http_parse</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">http_method</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">param</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="python"> <span class="n" style="color: #333;">proxy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">proxy_auth</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">''</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="python"> <span class="n" style="color: #333;">save_as</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">timeout_download</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">offline_dir</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left right">protocol_</span>options</span><span class="o" style="font-weight: 600;">=</span><span class="p">{}):</span></span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="python"> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">=</span><span class="p">{}):</span></span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="python"> <span class="n" style="color: #333;">protocol</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">downmessage_pb2</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">DownloadFile</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Protocol</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Value</span><span class="p">(</span><span class="n" style="color: #333;">protocol_name</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">upper</span><span class="p">())</span></span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="python"> <span class="n" style="color: #333;">downloader</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">protocol</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">]:</span> <span class="c1" style="color: #998; font-style: italic;"># FTP, SFTP</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -190,9 +190,9 @@ class DownloadService(object):</td>
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Set the name of the BioMAJ protocol to which we respond.</span></span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="python"> <span class="n" style="color: #333;">downloader</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">set_protocol</span><span class="p">(</span><span class="n" style="color: #333;">protocol_name</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left right">protocol_</span>options</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">debug</span><span class="p">(</span><span class="s" style="color: #d14;">"Received <span class="idiff left">protocol options: "</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff">str</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff right">protocol_</span>options</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="python"> <span class="n" style="color: #333;">downloader</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">set_options</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left right">protocol_</span>options</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">debug</span><span class="p">(</span><span class="s" style="color: #d14;">"Received <span class="idiff left">options: "</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff">str</span></span><span class="p"><span class="idiff right">(</span></span><span class="n" style="color: #333;">options</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="python"> <span class="n" style="color: #333;">downloader</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">set_options</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="python"> <span class="n" style="color: #333;">downloader</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">logger</span></span>
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="python"> <span class="n" style="color: #333;">downloader</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">set_files_to_download</span><span class="p">(</span><span class="n" style="color: #333;">remote_files</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -243,7 +243,7 @@ class DownloadService(object):</td>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="python"> <span class="n" style="color: #333;">save_as</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">biomaj_file_info</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">remote_file</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">save_as</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="python"> <span class="n" style="color: #333;">timeout_download</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">biomaj_file_info</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">timeout_download</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="python"> <span class="n" style="color: #333;">offline_dir</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">biomaj_file_info</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">local_dir</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC246" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">protocol_options</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="n" style="color: #333;"><span class="idiff">biomaj_file_info</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff right">protocol_</span>options</span></span>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">options</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="n" style="color: #333;"><span class="idiff">biomaj_file_info</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">.</span></span><span class="n" style="color: #333;">options</span></span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="python"> <span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">clean</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">biomaj_file_info</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948#96244b2e4c509dd6d54048527316551e27dcc1cc"><strong>biomaj_download/message/downmessage.proto</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -122,7 +122,7 @@ message DownloadFile {</td>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="protobuf"> <span class="k" style="font-weight: 600;">optional</span> <span class="n" style="color: #333;">Proxy</span> <span class="na" style="color: #008080;">proxy</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">6</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="protobuf"></span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="protobuf"> <span class="k" style="font-weight: 600;">optional</span> <span class="n" style="color: #333;">HTTP_METHOD</span> <span class="na" style="color: #008080;">http_method</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">8</span> <span class="p">[</span> <span class="k" style="font-weight: 600;">default</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">GET</span><span class="p">];</span></span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="protobuf"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="protobuf"> <span class="n" style="color: #333;">map</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">></span> <span class="na" style="color: #008080;"><span class="idiff left right">protocol_</span>options</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">9</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="protobuf"></span>
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="protobuf"> <span class="n" style="color: #333;">map</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">string</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">></span> <span class="na" style="color: #008080;">options</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">9</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="protobuf"></span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="protobuf"><span class="p">}</span></span></pre>
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<a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948#19e6b141e5be4adfd4186f5fe6c25fe5dd113c09"><strong>biomaj_download/message/downmessage_pb2.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,7 +19,7 @@ DESCRIPTOR = _descriptor.FileDescriptor(</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="python"> <span class="n" style="color: #333;">package</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'biomaj.download'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"> <span class="n" style="color: #333;">syntax</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'proto2'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python"> <span class="n" style="color: #333;">serialized_options</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">serialized_pb</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">_b</span><span class="p">(</span><span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\n\x11\x64</span><span class="s" style="color: #d14;">ownmessage.proto</span><span class="se" style="color: #d14;">\x12\x0f\x62</span><span class="s" style="color: #d14;">iomaj.download</span><span class="se" style="color: #d14;">\"\x9d\x02\n\x04\x46</span><span class="s" style="color: #d14;">ile</span><span class="se" style="color: #d14;">\x12\x0c\n\x04</span><span class="s" style="color: #d14;">name</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x02</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0c\n\x04</span><span class="s" style="color: #d14;">root</span><span class="se" style="color: #d14;">\x18\x02</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0f\n\x07</span><span class="s" style="color: #d14;">save_as</span><span class="se" style="color: #d14;">\x18\x03</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0b\n\x03</span><span class="s" style="color: #d14;">url</span><span class="se" style="color: #d14;">\x18\x04</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x30\n\x08</span><span class="s" style="color: #d14;">metadata</span><span class="se" style="color: #d14;">\x18\x05</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x0b\x32\x1e</span><span class="s" style="color: #d14;">.biomaj.download.File.MetaData</span><span class="se" style="color: #d14;">\x1a\xa8\x01\n\x08</span><span class="s" style="color: #d14;">MetaData</span><span class="se" style="color: #d14;">\x12\x13\n\x0b</span><span class="s" style="color: #d14;">permissions</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\r\n\x05</span><span class="s" style="color: #d14;">group</span><span class="se" style="color: #d14;">\x18\x02</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0c\n\x04</span><span class="s" style="color: #d14;">size</span><span class="se" style="color: #d14;">\x18\x03</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x03\x12\x0c\n\x04</span><span class="s" style="color: #d14;">hash</span><span class="se" style="color: #d14;">\x18\x04</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0c\n\x04</span><span class="s" style="color: #d14;">year</span><span class="se" style="color: #d14;">\x18\x05</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x05\x12\r\n\x05</span><span class="s" 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#d14;">\x18\t</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x15\n\r</span><span class="s" style="color: #d14;">download_time</span><span class="se" style="color: #d14;">\x18\n</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x03\"</span><span class="s" style="color: #d14;">0</span><span class="se" style="color: #d14;">\n\x08\x46</span><span class="s" style="color: #d14;">ileList</span><span class="se" style="color: #d14;">\x12</span><span class="s" style="color: #d14;">$</span><span class="se" style="color: #d14;">\n\x05\x66</span><span class="s" style="color: #d14;">iles</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x03</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x0b\x32\x15</span><span class="s" style="color: #d14;">.biomaj.download.File</span><span class="se" style="color: #d14;">\"\xaa\x02\n\t</span><span class="s" style="color: #d14;">Operation</span><span class="se" style="color: #d14;">\x12\x32\n\x04</span><span class="s" style="color: #d14;">type</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x02</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x0e\x32</span><span class="s" style="color: #d14;">$.biomaj.download.Operation.OPERATION</span><span class="se" style="color: #d14;">\x12</span><span class="s" style="color: #d14;">/</span><span class="se" style="color: #d14;">\n\x08\x64</span><span class="s" style="color: #d14;">ownload</span><span class="se" style="color: #d14;">\x18\x02</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x0b\x32\x1d</span><span class="s" style="color: #d14;">.biomaj.download.DownloadFile</span><span class="se" style="color: #d14;">\x12</span><span class="s" style="color: #d14;">)</span><span class="se" style="color: #d14;">\n\x07</span><span class="s" style="color: #d14;">process</span><span class="se" style="color: #d14;">\x18\x03</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x0b\x32\x18</span><span class="s" style="color: #d14;">.biomaj.download.Process</span><span class="se" style="color: #d14;">\x12</span><span class="s" style="color: #d14;">/</span><span class="se" style="color: #d14;">\n\x05</span><span class="s" style="color: #d14;">trace</span><span class="se" style="color: #d14;">\x18\x04</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x0b\x32</span><span class="s" style="color: #d14;"> .biomaj.download.Operation.Trace</span><span class="se" style="color: #d14;">\x1a</span><span class="s" style="color: #d14;">*</span><span class="se" style="color: #d14;">\n\x05</span><span class="s" style="color: #d14;">Trace</span><span class="se" style="color: #d14;">\x12\x10\n\x08</span><span class="s" style="color: #d14;">trace_id</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x02</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0f\n\x07</span><span class="s" style="color: #d14;">span_id</span><span class="se" style="color: #d14;">\x18\x02</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x02</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\"</span><span class="s" style="color: #d14;">0</span><span class="se" style="color: #d14;">\n\t</span><span class="s" style="color: #d14;">OPERATION</span><span class="se" style="color: #d14;">\x12\x08\n\x04</span><span class="s" style="color: #d14;">LIST</span><span class="se" style="color: #d14;">\x10\x00\x12\x0c\n\x08\x44</span><span class="s" style="color: #d14;">OWNLOAD</span><span class="se" style="color: #d14;">\x10\x01\x12\x0b\n\x07</span><span class="s" style="color: #d14;">PROCESS</span><span class="se" style="color: #d14;">\x10\x02\"\x17\n\x07</span><span class="s" style="color: #d14;">Process</span><span class="se" style="color: #d14;">\x12\x0c\n\x04\x65</span><span class="s" style="color: #d14;">xec</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x02</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\"\x<span class="idiff left">ad\x0b\n\x0c\x44</span></span><span class="s" style="color: #d14;"><span class="idiff">ownloadFile</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x0c\n\x04\x62\x61</span></span><span class="s" style="color: #d14;"><span class="idiff">nk</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x01</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x0f\n\x07</span></span><span class="s" style="color: #d14;"><span class="idiff">session</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x02</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x11\n\t</span></span><span class="s" style="color: #d14;"><span class="idiff">local_dir</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x03</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x18\n\x10</span></span><span class="s" style="color: #d14;"><span class="idiff">timeout_download</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x04</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x05\x12</span></span><span class="s" style="color: #d14;"><span class="idiff">=</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\x0b</span></span><span class="s" style="color: #d14;"><span class="idiff">remote_file</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x05</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0b\x32</span></span><span class="s" style="color: #d14;"><span class="idiff">(.biomaj.download.DownloadFile.RemoteFile</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x32\n\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">proxy</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x06</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0b\x32</span></span><span class="s" style="color: #d14;"><span class="idiff">#.biomaj.download.DownloadFile.Proxy</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x43\n\x0b</span></span><span class="s" style="color: #d14;"><span class="idiff">http_method</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x08</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0e\x32</span></span><span class="s" style="color: #d14;"><span class="idiff">).biomaj.download.DownloadFile.HTTP_METHOD:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x03</span></span><span class="s" style="color: #d14;"><span class="idiff">GET</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12</span></span><span class="s" style="color: #d14;"><span class="idiff">L</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\x10</span></span><span class="s" style="color: #d14;"><span class="idiff">protocol_options</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\t</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x03</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0b\x32\x32</span></span><span class="s" style="color: #d14;"><span class="idiff">.biomaj.download.DownloadFile.ProtocolOptionsEntry</span></span><span class="se" style="color: #d14;"><span class="idiff">\x1a</span></span><span class="s" style="color: #d14;"><span class="idiff">$</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">Param</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x0c\n\x04</span></span><span class="s" style="color: #d14;"><span class="idiff">name</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x01</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\r\n\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">value</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x02</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x1a\xcd\x03\n\t</span></span><span class="s" style="color: #d14;"><span class="idiff">HttpParse</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x91\x01\n\x08\x64</span></span><span class="s" style="color: #d14;"><span class="idiff">ir_line</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x01</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x7f</span></span><span class="s" style="color: #d14;"><span class="idiff"><img[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+src=</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">S]+</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+alt=</span></span><span class="se" style="color: #d14;"><span class="idiff">\"\\</span></span><span class="s" style="color: #d14;"><span class="idiff">[DIR</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">]</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]*/?>[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]*<a[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+href=</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">([</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">S]+)/</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]*>.*([</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2}-[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">w</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2,5}-[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{4}</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2}:[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2})</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\xa5\x01\n\t</span></span><span class="s" style="color: #d14;"><span class="idiff">file_line</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x02</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x91\x01</span></span><span class="s" style="color: #d14;"><span class="idiff"><img[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+src=</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">S]+</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+alt=</span></span><span class="se" style="color: #d14;"><span class="idiff">\"\\</span></span><span class="s" style="color: #d14;"><span class="idiff">[[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">]</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]*/?>[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]<a[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+href=</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">([</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">S]+)</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">.*([</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2}-[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">w</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2,5}-[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{4}</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2}:[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2})[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+([</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">.]+[MKG]{0,1})</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x13\n\x08\x64</span></span><span class="s" style="color: #d14;"><span class="idiff">ir_name</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x03</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x01\x31\x12\x13\n\x08\x64</span></span><span class="s" style="color: #d14;"><span class="idiff">ir_date</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x04</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x01\x32\x12\x14\n\t</span></span><span class="s" style="color: #d14;"><span class="idiff">file_name</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x05</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x01\x31\x12\x14\n\t</span></span><span class="s" style="color: #d14;"><span class="idiff">file_date</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x06</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x01\x32\x12\x18\n\x10\x66</span></span><span class="s" style="color: #d14;"><span class="idiff">ile_date_format</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x07</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x14\n\t</span></span><span class="s" style="color: #d14;"><span class="idiff">file_size</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x08</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x01\x33\x1a\xb8\x02\n\n</span></span><span class="s" style="color: #d14;"><span class="idiff">RemoteFile</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12</span></span><span class="s" style="color: #d14;"><span class="idiff">$</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\x05\x66</span></span><span class="s" style="color: #d14;"><span class="idiff">iles</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x01</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x03</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0b\x32\x15</span></span><span class="s" style="color: #d14;"><span class="idiff">.biomaj.download.File</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x38\n\x08</span></span><span class="s" style="color: #d14;"><span class="idiff">protocol</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x02</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0e\x32</span></span><span class="s" style="color: #d14;"><span class="idiff">&.biomaj.download.DownloadFile.Protocol</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x0e\n\x06</span></span><span class="s" style="color: #d14;"><span class="idiff">server</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x03</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x12\n\n</span></span><span class="s" style="color: #d14;"><span class="idiff">remote_dir</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x04</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x0f\n\x07</span></span><span class="s" style="color: #d14;"><span class="idiff">save_as</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x05</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x32\n\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">param</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x06</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x03</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0b\x32</span></span><span class="s" style="color: #d14;"><span class="idiff">#.biomaj.download.DownloadFile.Param</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12</span></span><span class="s" style="color: #d14;"><span class="idiff">;</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\n</span></span><span class="s" style="color: #d14;"><span class="idiff">http_parse</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x07</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0b\x32\'</span></span><span class="s" style="color: #d14;"><span class="idiff">.biomaj.download.DownloadFile.HttpParse</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x13\n\x0b\x63</span></span><span class="s" style="color: #d14;"><span class="idiff">redentials</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x08</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x0f\n\x07</span></span><span class="s" style="color: #d14;"><span class="idiff">matches</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\t</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x03</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x1a</span></span><span class="s" style="color: #d14;"><span class="idiff">*</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">Proxy</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\r\n\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">proxy</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x01</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x12\n\n</span></span><span class="s" style="color: #d14;"><span class="idiff">proxy_auth</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x02</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x1a\x36\n\x14</span></span><span class="s" style="color: #d14;"><span class="idiff right">Protocol</span>OptionsEntry</span><span class="se" style="color: #d14;">\x12\x0b\n\x03</span><span class="s" style="color: #d14;">key</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\r\n\x05</span><span class="s" style="color: #d14;">value</span><span class="se" style="color: #d14;">\x18\x02</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">:</span><span class="se" style="color: #d14;">\x02\x38\x01\"\x93\x01\n\x08</span><span class="s" style="color: #d14;">Protocol</span><span class="se" style="color: #d14;">\x12\x07\n\x03\x46</span><span class="s" style="color: #d14;">TP</span><span class="se" style="color: #d14;">\x10\x00\x12\x08\n\x04\x46</span><span class="s" style="color: #d14;">TPS</span><span class="se" style="color: #d14;">\x10\x01\x12\x08\n\x04</span><span class="s" style="color: #d14;">HTTP</span><span class="se" style="color: #d14;">\x10\x02\x12\t\n\x05</span><span class="s" style="color: #d14;">HTTPS</span><span class="se" style="color: #d14;">\x10\x03\x12\r\n\t</span><span class="s" style="color: #d14;">DIRECTFTP</span><span class="se" style="color: #d14;">\x10\x04\x12\x0e\n\n</span><span class="s" style="color: #d14;">DIRECTHTTP</span><span class="se" style="color: #d14;">\x10\x05\x12\x0f\n\x0b\x44</span><span class="s" style="color: #d14;">IRECTHTTPS</span><span class="se" style="color: #d14;">\x10\x06\x12\t\n\x05</span><span class="s" style="color: #d14;">LOCAL</span><span class="se" style="color: #d14;">\x10\x07\x12\t\n\x05</span><span class="s" style="color: #d14;">RSYNC</span><span class="se" style="color: #d14;">\x10\x08\x12\t\n\x05</span><span class="s" style="color: #d14;">IRODS</span><span class="se" style="color: #d14;">\x10\t\x12\x0e\n\n</span><span class="s" style="color: #d14;">DIRECTFTPS</span><span class="se" style="color: #d14;">\x10\n\"</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\n\x0b</span><span class="s" style="color: #d14;">HTTP_METHOD</span><span class="se" style="color: #d14;">\x12\x07\n\x03</span><span class="s" style="color: #d14;">GET</span><span class="se" style="color: #d14;">\x10\x00\x12\x08\n\x04</span><span class="s" style="color: #d14;">POST</span><span class="se" style="color: #d14;">\x10\x01</span><span class="s" style="color: #d14;">'</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">serialized_pb</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">_b</span><span class="p">(</span><span class="s" style="color: #d14;">'</span><span class="se" style="color: #d14;">\n\x11\x64</span><span class="s" style="color: #d14;">ownmessage.proto</span><span class="se" style="color: #d14;">\x12\x0f\x62</span><span class="s" style="color: #d14;">iomaj.download</span><span class="se" style="color: #d14;">\"\x9d\x02\n\x04\x46</span><span class="s" style="color: #d14;">ile</span><span class="se" style="color: #d14;">\x12\x0c\n\x04</span><span class="s" style="color: #d14;">name</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x02</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0c\n\x04</span><span class="s" style="color: #d14;">root</span><span class="se" style="color: #d14;">\x18\x02</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0f\n\x07</span><span class="s" style="color: #d14;">save_as</span><span class="se" style="color: #d14;">\x18\x03</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0b\n\x03</span><span class="s" style="color: #d14;">url</span><span class="se" style="color: #d14;">\x18\x04</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x30\n\x08</span><span class="s" style="color: #d14;">metadata</span><span class="se" style="color: #d14;">\x18\x05</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x0b\x32\x1e</span><span class="s" style="color: #d14;">.biomaj.download.File.MetaData</span><span class="se" style="color: #d14;">\x1a\xa8\x01\n\x08</span><span class="s" style="color: #d14;">MetaData</span><span class="se" style="color: #d14;">\x12\x13\n\x0b</span><span class="s" style="color: #d14;">permissions</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\r\n\x05</span><span class="s" style="color: #d14;">group</span><span class="se" style="color: #d14;">\x18\x02</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0c\n\x04</span><span class="s" style="color: #d14;">size</span><span class="se" style="color: #d14;">\x18\x03</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x03\x12\x0c\n\x04</span><span class="s" style="color: #d14;">hash</span><span class="se" style="color: #d14;">\x18\x04</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0c\n\x04</span><span class="s" style="color: #d14;">year</span><span class="se" style="color: #d14;">\x18\x05</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x05\x12\r\n\x05</span><span class="s" style="color: #d14;">month</span><span class="se" style="color: #d14;">\x18\x06</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x05\x12\x0b\n\x03\x64\x61</span><span class="s" style="color: #d14;">y</span><span class="se" style="color: #d14;">\x18\x07</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x05\x12\x0e\n\x06\x66</span><span class="s" style="color: #d14;">ormat</span><span class="se" style="color: #d14;">\x18\x08</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0b\n\x03</span><span class="s" style="color: #d14;">md5</span><span class="se" style="color: #d14;">\x18\t</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x15\n\r</span><span class="s" style="color: #d14;">download_time</span><span class="se" style="color: #d14;">\x18\n</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x03\"</span><span class="s" style="color: #d14;">0</span><span class="se" style="color: #d14;">\n\x08\x46</span><span class="s" style="color: #d14;">ileList</span><span class="se" style="color: #d14;">\x12</span><span class="s" style="color: #d14;">$</span><span class="se" style="color: #d14;">\n\x05\x66</span><span class="s" style="color: #d14;">iles</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x03</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x0b\x32\x15</span><span class="s" style="color: #d14;">.biomaj.download.File</span><span class="se" style="color: #d14;">\"\xaa\x02\n\t</span><span class="s" style="color: #d14;">Operation</span><span class="se" style="color: #d14;">\x12\x32\n\x04</span><span class="s" style="color: #d14;">type</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x02</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x0e\x32</span><span class="s" style="color: #d14;">$.biomaj.download.Operation.OPERATION</span><span class="se" style="color: #d14;">\x12</span><span class="s" style="color: #d14;">/</span><span class="se" style="color: #d14;">\n\x08\x64</span><span class="s" style="color: #d14;">ownload</span><span class="se" style="color: #d14;">\x18\x02</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x0b\x32\x1d</span><span class="s" style="color: #d14;">.biomaj.download.DownloadFile</span><span class="se" style="color: #d14;">\x12</span><span class="s" style="color: #d14;">)</span><span class="se" style="color: #d14;">\n\x07</span><span class="s" style="color: #d14;">process</span><span class="se" style="color: #d14;">\x18\x03</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x0b\x32\x18</span><span class="s" style="color: #d14;">.biomaj.download.Process</span><span class="se" style="color: #d14;">\x12</span><span class="s" style="color: #d14;">/</span><span class="se" style="color: #d14;">\n\x05</span><span class="s" style="color: #d14;">trace</span><span class="se" style="color: #d14;">\x18\x04</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\x0b\x32</span><span class="s" style="color: #d14;"> .biomaj.download.Operation.Trace</span><span class="se" style="color: #d14;">\x1a</span><span class="s" style="color: #d14;">*</span><span class="se" style="color: #d14;">\n\x05</span><span class="s" style="color: #d14;">Trace</span><span class="se" style="color: #d14;">\x12\x10\n\x08</span><span class="s" style="color: #d14;">trace_id</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x02</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\x0f\n\x07</span><span class="s" style="color: #d14;">span_id</span><span class="se" style="color: #d14;">\x18\x02</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x02</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\"</span><span class="s" style="color: #d14;">0</span><span class="se" style="color: #d14;">\n\t</span><span class="s" style="color: #d14;">OPERATION</span><span class="se" style="color: #d14;">\x12\x08\n\x04</span><span class="s" style="color: #d14;">LIST</span><span class="se" style="color: #d14;">\x10\x00\x12\x0c\n\x08\x44</span><span class="s" style="color: #d14;">OWNLOAD</span><span class="se" style="color: #d14;">\x10\x01\x12\x0b\n\x07</span><span class="s" style="color: #d14;">PROCESS</span><span class="se" style="color: #d14;">\x10\x02\"\x17\n\x07</span><span class="s" style="color: #d14;">Process</span><span class="se" style="color: #d14;">\x12\x0c\n\x04\x65</span><span class="s" style="color: #d14;">xec</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x02</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\"\x<span class="idiff left">94\x0b\n\x0c\x44</span></span><span class="s" style="color: #d14;"><span class="idiff">ownloadFile</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x0c\n\x04\x62\x61</span></span><span class="s" style="color: #d14;"><span class="idiff">nk</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x01</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x0f\n\x07</span></span><span class="s" style="color: #d14;"><span class="idiff">session</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x02</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x11\n\t</span></span><span class="s" style="color: #d14;"><span class="idiff">local_dir</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x03</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x18\n\x10</span></span><span class="s" style="color: #d14;"><span class="idiff">timeout_download</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x04</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x05\x12</span></span><span class="s" style="color: #d14;"><span class="idiff">=</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\x0b</span></span><span class="s" style="color: #d14;"><span class="idiff">remote_file</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x05</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0b\x32</span></span><span class="s" style="color: #d14;"><span class="idiff">(.biomaj.download.DownloadFile.RemoteFile</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x32\n\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">proxy</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x06</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0b\x32</span></span><span class="s" style="color: #d14;"><span class="idiff">#.biomaj.download.DownloadFile.Proxy</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x43\n\x0b</span></span><span class="s" style="color: #d14;"><span class="idiff">http_method</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x08</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0e\x32</span></span><span class="s" style="color: #d14;"><span class="idiff">).biomaj.download.DownloadFile.HTTP_METHOD:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x03</span></span><span class="s" style="color: #d14;"><span class="idiff">GET</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12</span></span><span class="s" style="color: #d14;"><span class="idiff">;</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\x07</span></span><span class="s" style="color: #d14;"><span class="idiff">options</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\t</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x03</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0b\x32</span></span><span class="s" style="color: #d14;"><span class="idiff">*.biomaj.download.DownloadFile.OptionsEntry</span></span><span class="se" style="color: #d14;"><span class="idiff">\x1a</span></span><span class="s" style="color: #d14;"><span class="idiff">$</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">Param</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x0c\n\x04</span></span><span class="s" style="color: #d14;"><span class="idiff">name</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x01</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\r\n\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">value</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x02</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x1a\xcd\x03\n\t</span></span><span class="s" style="color: #d14;"><span class="idiff">HttpParse</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x91\x01\n\x08\x64</span></span><span class="s" style="color: #d14;"><span class="idiff">ir_line</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x01</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x7f</span></span><span class="s" style="color: #d14;"><span class="idiff"><img[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+src=</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">S]+</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+alt=</span></span><span class="se" style="color: #d14;"><span class="idiff">\"\\</span></span><span class="s" style="color: #d14;"><span class="idiff">[DIR</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">]</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]*/?>[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]*<a[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+href=</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">([</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">S]+)/</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]*>.*([</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2}-[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">w</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2,5}-[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{4}</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2}:[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2})</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\xa5\x01\n\t</span></span><span class="s" style="color: #d14;"><span class="idiff">file_line</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x02</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x91\x01</span></span><span class="s" style="color: #d14;"><span class="idiff"><img[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+src=</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">S]+</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+alt=</span></span><span class="se" style="color: #d14;"><span class="idiff">\"\\</span></span><span class="s" style="color: #d14;"><span class="idiff">[[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">]</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]*/?>[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]<a[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+href=</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">([</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">S]+)</span></span><span class="se" style="color: #d14;"><span class="idiff">\"</span></span><span class="s" style="color: #d14;"><span class="idiff">.*([</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2}-[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">w</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2,5}-[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{4}</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2}:[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d]{2})[</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">s]+([</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">d</span></span><span class="se" style="color: #d14;"><span class="idiff">\\</span></span><span class="s" style="color: #d14;"><span class="idiff">.]+[MKG]{0,1})</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x13\n\x08\x64</span></span><span class="s" style="color: #d14;"><span class="idiff">ir_name</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x03</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x01\x31\x12\x13\n\x08\x64</span></span><span class="s" style="color: #d14;"><span class="idiff">ir_date</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x04</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x01\x32\x12\x14\n\t</span></span><span class="s" style="color: #d14;"><span class="idiff">file_name</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x05</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x01\x31\x12\x14\n\t</span></span><span class="s" style="color: #d14;"><span class="idiff">file_date</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x06</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x01\x32\x12\x18\n\x10\x66</span></span><span class="s" style="color: #d14;"><span class="idiff">ile_date_format</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x07</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x14\n\t</span></span><span class="s" style="color: #d14;"><span class="idiff">file_size</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x08</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">:</span></span><span class="se" style="color: #d14;"><span class="idiff">\x01\x33\x1a\xb8\x02\n\n</span></span><span class="s" style="color: #d14;"><span class="idiff">RemoteFile</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12</span></span><span class="s" style="color: #d14;"><span class="idiff">$</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\x05\x66</span></span><span class="s" style="color: #d14;"><span class="idiff">iles</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x01</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x03</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0b\x32\x15</span></span><span class="s" style="color: #d14;"><span class="idiff">.biomaj.download.File</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x38\n\x08</span></span><span class="s" style="color: #d14;"><span class="idiff">protocol</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x02</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0e\x32</span></span><span class="s" style="color: #d14;"><span class="idiff">&.biomaj.download.DownloadFile.Protocol</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x0e\n\x06</span></span><span class="s" style="color: #d14;"><span class="idiff">server</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x03</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x12\n\n</span></span><span class="s" style="color: #d14;"><span class="idiff">remote_dir</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x04</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x0f\n\x07</span></span><span class="s" style="color: #d14;"><span class="idiff">save_as</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x05</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x32\n\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">param</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x06</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x03</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0b\x32</span></span><span class="s" style="color: #d14;"><span class="idiff">#.biomaj.download.DownloadFile.Param</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12</span></span><span class="s" style="color: #d14;"><span class="idiff">;</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\n</span></span><span class="s" style="color: #d14;"><span class="idiff">http_parse</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x07</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\x0b\x32\'</span></span><span class="s" style="color: #d14;"><span class="idiff">.biomaj.download.DownloadFile.HttpParse</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\x13\n\x0b\x63</span></span><span class="s" style="color: #d14;"><span class="idiff">redentials</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x08</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x0f\n\x07</span></span><span class="s" style="color: #d14;"><span class="idiff">matches</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\t</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x03</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x1a</span></span><span class="s" style="color: #d14;"><span class="idiff">*</span></span><span class="se" style="color: #d14;"><span class="idiff">\n\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">Proxy</span></span><span class="se" style="color: #d14;"><span class="idiff">\x12\r\n\x05</span></span><span class="s" style="color: #d14;"><span class="idiff">proxy</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x01</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x02</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x12\x12\n\n</span></span><span class="s" style="color: #d14;"><span class="idiff">proxy_auth</span></span><span class="se" style="color: #d14;"><span class="idiff">\x18\x02</span></span><span class="s" style="color: #d14;"><span class="idiff"> </span></span><span class="se" style="color: #d14;"><span class="idiff">\x01</span></span><span class="s" style="color: #d14;"><span class="idiff">(</span></span><span class="se" style="color: #d14;"><span class="idiff">\t\x1a</span></span><span class="s" style="color: #d14;"><span class="idiff">.</span></span><span class="se" style="color: #d14;"><span class="idiff right">\n\x0c</span></span><span class="s" style="color: #d14;">OptionsEntry</span><span class="se" style="color: #d14;">\x12\x0b\n\x03</span><span class="s" style="color: #d14;">key</span><span class="se" style="color: #d14;">\x18\x01</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t\x12\r\n\x05</span><span class="s" style="color: #d14;">value</span><span class="se" style="color: #d14;">\x18\x02</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\x01</span><span class="s" style="color: #d14;">(</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">:</span><span class="se" style="color: #d14;">\x02\x38\x01\"\x93\x01\n\x08</span><span class="s" style="color: #d14;">Protocol</span><span class="se" style="color: #d14;">\x12\x07\n\x03\x46</span><span class="s" style="color: #d14;">TP</span><span class="se" style="color: #d14;">\x10\x00\x12\x08\n\x04\x46</span><span class="s" style="color: #d14;">TPS</span><span class="se" style="color: #d14;">\x10\x01\x12\x08\n\x04</span><span class="s" style="color: #d14;">HTTP</span><span class="se" style="color: #d14;">\x10\x02\x12\t\n\x05</span><span class="s" style="color: #d14;">HTTPS</span><span class="se" style="color: #d14;">\x10\x03\x12\r\n\t</span><span class="s" style="color: #d14;">DIRECTFTP</span><span class="se" style="color: #d14;">\x10\x04\x12\x0e\n\n</span><span class="s" style="color: #d14;">DIRECTHTTP</span><span class="se" style="color: #d14;">\x10\x05\x12\x0f\n\x0b\x44</span><span class="s" style="color: #d14;">IRECTHTTPS</span><span class="se" style="color: #d14;">\x10\x06\x12\t\n\x05</span><span class="s" style="color: #d14;">LOCAL</span><span class="se" style="color: #d14;">\x10\x07\x12\t\n\x05</span><span class="s" style="color: #d14;">RSYNC</span><span class="se" style="color: #d14;">\x10\x08\x12\t\n\x05</span><span class="s" style="color: #d14;">IRODS</span><span class="se" style="color: #d14;">\x10\t\x12\x0e\n\n</span><span class="s" style="color: #d14;">DIRECTFTPS</span><span class="se" style="color: #d14;">\x10\n\"</span><span class="s" style="color: #d14;"> </span><span class="se" style="color: #d14;">\n\x0b</span><span class="s" style="color: #d14;">HTTP_METHOD</span><span class="se" style="color: #d14;">\x12\x07\n\x03</span><span class="s" style="color: #d14;">GET</span><span class="se" style="color: #d14;">\x10\x00\x12\x08\n\x04</span><span class="s" style="color: #d14;">POST</span><span class="se" style="color: #d14;">\x10\x01</span><span class="s" style="color: #d14;">'</span><span class="p">)</span></span>
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="python"><span class="p">)</span></span>
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="python"></span>
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -103,8 +103,8 @@ _DOWNLOADFILE_PROTOCOL = _descriptor.EnumDescriptor(</td>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="python"> <span class="n" style="color: #333;">containing_type</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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105
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="python"> <span class="n" style="color: #333;">serialized_options</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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106
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">19<span class="idiff left right">75</span></span><span class="p">,</span></span>
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107
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2<span class="idiff left right">122</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">19<span class="idiff left right">50</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2<span class="idiff left right">097</span></span><span class="p">,</span></span>
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108
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="python"><span class="p">)</span></span>
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109
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="python"><span class="n" style="color: #333;">_sym_db</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">RegisterEnumDescriptor</span><span class="p">(</span><span class="n" style="color: #333;">_DOWNLOADFILE_PROTOCOL</span><span class="p">)</span></span>
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110
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110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -125,8 +125,8 @@ _DOWNLOADFILE_HTTP_METHOD = _descriptor.EnumDescriptor(</td>
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125
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="python"> <span class="p">],</span></span>
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126
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="python"> <span class="n" style="color: #333;">containing_type</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="python"> <span class="n" style="color: #333;">serialized_options</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2<span class="idiff left right">124</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">21<span class="idiff left right">56</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2<span class="idiff left right">099</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">21<span class="idiff left right">31</span></span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="python"><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="python"><span class="n" style="color: #333;">_sym_db</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">RegisterEnumDescriptor</span><span class="p">(</span><span class="n" style="color: #333;">_DOWNLOADFILE_HTTP_METHOD</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -468,8 +468,8 @@ _DOWNLOADFILE_PARAM = _descriptor.Descriptor(</td>
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<pre style="margin: 0;"> <span id="LC468" class="line" lang="python"> <span class="n" style="color: #333;">extension_ranges</span><span class="o" style="font-weight: 600;">=</span><span class="p">[],</span></span>
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<pre style="margin: 0;"> <span id="LC469" class="line" lang="python"> <span class="n" style="color: #333;">oneofs</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC470" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC471" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">10<span class="idiff left right">57</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC472" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">10<span class="idiff left right">93</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">10<span class="idiff left right">40</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">10<span class="idiff left right">76</span></span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="python"><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC474" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC475" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_HTTPPARSE</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_descriptor</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Descriptor</span><span class="p">(</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -547,8 +547,8 @@ _DOWNLOADFILE_HTTPPARSE = _descriptor.Descriptor(</td>
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<pre style="margin: 0;"> <span id="LC547" class="line" lang="python"> <span class="n" style="color: #333;">extension_ranges</span><span class="o" style="font-weight: 600;">=</span><span class="p">[],</span></span>
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<pre style="margin: 0;"> <span id="LC548" class="line" lang="python"> <span class="n" style="color: #333;">oneofs</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC549" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC550" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">10<span class="idiff left right">96</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC551" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">15<span class="idiff left right">57</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC550" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">10<span class="idiff left right">79</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC551" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">15<span class="idiff left right">40</span></span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC552" class="line" lang="python"><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC554" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_REMOTEFILE</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_descriptor</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Descriptor</span><span class="p">(</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -633,8 +633,8 @@ _DOWNLOADFILE_REMOTEFILE = _descriptor.Descriptor(</td>
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<pre style="margin: 0;"> <span id="LC633" class="line" lang="python"> <span class="n" style="color: #333;">extension_ranges</span><span class="o" style="font-weight: 600;">=</span><span class="p">[],</span></span>
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<pre style="margin: 0;"> <span id="LC634" class="line" lang="python"> <span class="n" style="color: #333;">oneofs</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC635" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC636" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">15<span class="idiff left right">60</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC637" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">18<span class="idiff left right">72</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC636" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">15<span class="idiff left right">43</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC637" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">18<span class="idiff left right">55</span></span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC638" class="line" lang="python"><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC639" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC640" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_PROXY</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_descriptor</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Descriptor</span><span class="p">(</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -670,26 +670,26 @@ _DOWNLOADFILE_PROXY = _descriptor.Descriptor(</td>
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<pre style="margin: 0;"> <span id="LC670" class="line" lang="python"> <span class="n" style="color: #333;">extension_ranges</span><span class="o" style="font-weight: 600;">=</span><span class="p">[],</span></span>
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<pre style="margin: 0;"> <span id="LC671" class="line" lang="python"> <span class="n" style="color: #333;">oneofs</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC672" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC673" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">18<span class="idiff left right">74</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC674" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1<span class="idiff left right">916</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC673" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">18<span class="idiff left right">57</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC674" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1<span class="idiff left right">899</span></span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC675" class="line" lang="python"><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC676" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC677" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_<span class="idiff left right">PROTOCOL</span>OPTIONSENTRY</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_descriptor</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Descriptor</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC678" class="line" lang="python"> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'<span class="idiff left right">Protocol</span>OptionsEntry'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC679" class="line" lang="python"> <span class="n" style="color: #333;">full_name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'biomaj.download.DownloadFile.<span class="idiff left right">Protocol</span>OptionsEntry'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC677" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_OPTIONSENTRY</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_descriptor</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Descriptor</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC678" class="line" lang="python"> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'OptionsEntry'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC679" class="line" lang="python"> <span class="n" style="color: #333;">full_name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'biomaj.download.DownloadFile.OptionsEntry'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC680" class="line" lang="python"> <span class="n" style="color: #333;">filename</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC681" class="line" lang="python"> <span class="nb" style="color: #0086b3;">file</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">DESCRIPTOR</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC682" class="line" lang="python"> <span class="n" style="color: #333;">containing_type</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC683" class="line" lang="python"> <span class="n" style="color: #333;">fields</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC684" class="line" lang="python"> <span class="n" style="color: #333;">_descriptor</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FieldDescriptor</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC685" class="line" lang="python"> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'key'</span><span class="p">,</span> <span class="n" style="color: #333;">full_name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'biomaj.download.DownloadFile.<span class="idiff left right">Protocol</span>OptionsEntry.key'</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC685" class="line" lang="python"> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'key'</span><span class="p">,</span> <span class="n" style="color: #333;">full_name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'biomaj.download.DownloadFile.OptionsEntry.key'</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC686" class="line" lang="python"> <span class="n" style="color: #333;">number</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">type</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="n" style="color: #333;">cpp_type</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="n" style="color: #333;">label</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC687" class="line" lang="python"> <span class="n" style="color: #333;">has_default_value</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">default_value</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">_b</span><span class="p">(</span><span class="s" style="color: #d14;">""</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">decode</span><span class="p">(</span><span class="s" style="color: #d14;">'utf-8'</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC688" class="line" lang="python"> <span class="n" style="color: #333;">message_type</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">enum_type</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">containing_type</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC689" class="line" lang="python"> <span class="n" style="color: #333;">is_extension</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">extension_scope</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC690" class="line" lang="python"> <span class="n" style="color: #333;">serialized_options</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">file</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">DESCRIPTOR</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC691" class="line" lang="python"> <span class="n" style="color: #333;">_descriptor</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FieldDescriptor</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC692" class="line" lang="python"> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'value'</span><span class="p">,</span> <span class="n" style="color: #333;">full_name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'biomaj.download.DownloadFile.<span class="idiff left right">Protocol</span>OptionsEntry.value'</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC692" class="line" lang="python"> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'value'</span><span class="p">,</span> <span class="n" style="color: #333;">full_name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'biomaj.download.DownloadFile.OptionsEntry.value'</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC693" class="line" lang="python"> <span class="n" style="color: #333;">number</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">type</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="n" style="color: #333;">cpp_type</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="n" style="color: #333;">label</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC694" class="line" lang="python"> <span class="n" style="color: #333;">has_default_value</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">default_value</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">_b</span><span class="p">(</span><span class="s" style="color: #d14;">""</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">decode</span><span class="p">(</span><span class="s" style="color: #d14;">'utf-8'</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC695" class="line" lang="python"> <span class="n" style="color: #333;">message_type</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">enum_type</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">containing_type</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -707,8 +707,8 @@ _DOWNLOADFILE_PROTOCOLOPTIONSENTRY = _descriptor.Descriptor(</td>
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707
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<pre style="margin: 0;"> <span id="LC707" class="line" lang="python"> <span class="n" style="color: #333;">extension_ranges</span><span class="o" style="font-weight: 600;">=</span><span class="p">[],</span></span>
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708
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<pre style="margin: 0;"> <span id="LC708" class="line" lang="python"> <span class="n" style="color: #333;">oneofs</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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709
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709
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<pre style="margin: 0;"> <span id="LC709" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC710" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">19<span class="idiff left right">18</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC711" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">19<span class="idiff left right">72</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC710" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">19<span class="idiff left right">01</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC711" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">19<span class="idiff left right">47</span></span><span class="p">,</span></span>
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712
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<pre style="margin: 0;"> <span id="LC712" class="line" lang="python"><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC713" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC714" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_descriptor</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Descriptor</span><span class="p">(</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -768,7 +768,7 @@ _DOWNLOADFILE = _descriptor.Descriptor(</td>
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<pre style="margin: 0;"> <span id="LC768" class="line" lang="python"> <span class="n" style="color: #333;">is_extension</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">extension_scope</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC769" class="line" lang="python"> <span class="n" style="color: #333;">serialized_options</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">file</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">DESCRIPTOR</span><span class="p">),</span></span>
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770
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770
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<pre style="margin: 0;"> <span id="LC770" class="line" lang="python"> <span class="n" style="color: #333;">_descriptor</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FieldDescriptor</span><span class="p">(</span></span>
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771
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<pre style="margin: 0;">-<span id="LC771" class="line" lang="python"> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'<span class="idiff left">protocol_options'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">full_name</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="s" style="color: #d14;"><span class="idiff right">'biomaj.download.DownloadFile.protocol_</span>options'</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">7</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC771" class="line" lang="python"> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'<span class="idiff left">options'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">full_name</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="s" style="color: #d14;"><span class="idiff right">'biomaj.download.DownloadFile.</span>options'</span><span class="p">,</span> <span class="n" style="color: #333;">index</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">7</span><span class="p">,</span></span>
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772
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772
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<pre style="margin: 0;"> <span id="LC772" class="line" lang="python"> <span class="n" style="color: #333;">number</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">type</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">11</span><span class="p">,</span> <span class="n" style="color: #333;">cpp_type</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="n" style="color: #333;">label</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">3</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC773" class="line" lang="python"> <span class="n" style="color: #333;">has_default_value</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">default_value</span><span class="o" style="font-weight: 600;">=</span><span class="p">[],</span></span>
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<pre style="margin: 0;"> <span id="LC774" class="line" lang="python"> <span class="n" style="color: #333;">message_type</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">enum_type</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">containing_type</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -777,7 +777,7 @@ _DOWNLOADFILE = _descriptor.Descriptor(</td>
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<pre style="margin: 0;"> <span id="LC777" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC778" class="line" lang="python"> <span class="n" style="color: #333;">extensions</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC779" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC780" class="line" lang="python"> <span class="n" style="color: #333;">nested_types</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="n" style="color: #333;">_DOWNLOADFILE_PARAM</span><span class="p">,</span> <span class="n" style="color: #333;">_DOWNLOADFILE_HTTPPARSE</span><span class="p">,</span> <span class="n" style="color: #333;">_DOWNLOADFILE_REMOTEFILE</span><span class="p">,</span> <span class="n" style="color: #333;">_DOWNLOADFILE_PROXY</span><span class="p">,</span> <span class="n" style="color: #333;">_DOWNLOADFILE_<span class="idiff left right">PROTOCOL</span>OPTIONSENTRY</span><span class="p">,</span> <span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC780" class="line" lang="python"> <span class="n" style="color: #333;">nested_types</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="n" style="color: #333;">_DOWNLOADFILE_PARAM</span><span class="p">,</span> <span class="n" style="color: #333;">_DOWNLOADFILE_HTTPPARSE</span><span class="p">,</span> <span class="n" style="color: #333;">_DOWNLOADFILE_REMOTEFILE</span><span class="p">,</span> <span class="n" style="color: #333;">_DOWNLOADFILE_PROXY</span><span class="p">,</span> <span class="n" style="color: #333;">_DOWNLOADFILE_OPTIONSENTRY</span><span class="p">,</span> <span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC781" class="line" lang="python"> <span class="n" style="color: #333;">enum_types</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC782" class="line" lang="python"> <span class="n" style="color: #333;">_DOWNLOADFILE_PROTOCOL</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC783" class="line" lang="python"> <span class="n" style="color: #333;">_DOWNLOADFILE_HTTP_METHOD</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -789,7 +789,7 @@ _DOWNLOADFILE = _descriptor.Descriptor(</td>
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<pre style="margin: 0;"> <span id="LC789" class="line" lang="python"> <span class="n" style="color: #333;">oneofs</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC790" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC791" class="line" lang="python"> <span class="n" style="color: #333;">serialized_start</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">703</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC792" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">21<span class="idiff left right">56</span></span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC792" class="line" lang="python"> <span class="n" style="color: #333;">serialized_end</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">21<span class="idiff left right">31</span></span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC793" class="line" lang="python"><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC794" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC795" class="line" lang="python"><span class="n" style="color: #333;">_FILE_METADATA</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">containing_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_FILE</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -809,11 +809,11 @@ _DOWNLOADFILE_REMOTEFILE.fields_by_name['param'].message_type = _DOWNLOADFILE_PA</td>
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<pre style="margin: 0;"> <span id="LC809" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_REMOTEFILE</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">fields_by_name</span><span class="p">[</span><span class="s" style="color: #d14;">'http_parse'</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">message_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE_HTTPPARSE</span></span>
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<pre style="margin: 0;"> <span id="LC810" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_REMOTEFILE</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">containing_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE</span></span>
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<pre style="margin: 0;"> <span id="LC811" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_PROXY</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">containing_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE</span></span>
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<pre style="margin: 0;">-<span id="LC812" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_<span class="idiff left right">PROTOCOL</span>OPTIONSENTRY</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">containing_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE</span></span>
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<pre style="margin: 0;">+<span id="LC812" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_OPTIONSENTRY</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">containing_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE</span></span>
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<pre style="margin: 0;"> <span id="LC813" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">fields_by_name</span><span class="p">[</span><span class="s" style="color: #d14;">'remote_file'</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">message_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE_REMOTEFILE</span></span>
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<pre style="margin: 0;"> <span id="LC814" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">fields_by_name</span><span class="p">[</span><span class="s" style="color: #d14;">'proxy'</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">message_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE_PROXY</span></span>
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<pre style="margin: 0;"> <span id="LC815" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">fields_by_name</span><span class="p">[</span><span class="s" style="color: #d14;">'http_method'</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">enum_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE_HTTP_METHOD</span></span>
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<pre style="margin: 0;">-<span id="LC816" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">fields_by_name</span><span class="p">[</span><span class="s" style="color: #d14;">'<span class="idiff left">protocol_options'</span></span><span class="p"><span class="idiff">]</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">message_type</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">_DOWNLOADFILE_PROTOCOL</span>OPTIONSENTRY</span></span>
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<pre style="margin: 0;">+<span id="LC816" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">fields_by_name</span><span class="p">[</span><span class="s" style="color: #d14;">'<span class="idiff left">options'</span></span><span class="p"><span class="idiff">]</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">message_type</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">_DOWNLOADFILE_</span>OPTIONSENTRY</span></span>
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<pre style="margin: 0;"> <span id="LC817" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_PROTOCOL</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">containing_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE</span></span>
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<pre style="margin: 0;"> <span id="LC818" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_HTTP_METHOD</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">containing_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE</span></span>
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<pre style="margin: 0;"> <span id="LC819" class="line" lang="python"><span class="n" style="color: #333;">DESCRIPTOR</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">message_types_by_name</span><span class="p">[</span><span class="s" style="color: #d14;">'File'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_FILE</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -897,10 +897,10 @@ DownloadFile = _reflection.GeneratedProtocolMessageType('DownloadFile', (_messag</td>
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<pre style="margin: 0;"> <span id="LC897" class="line" lang="python"> <span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC898" class="line" lang="python"> <span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC899" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC900" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">ProtocolOptionsEntry</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">_reflection</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">GeneratedProtocolMessageType</span></span><span class="p"><span class="idiff">(</span></span><span class="s" style="color: #d14;"><span class="idiff right">'Protocol</span>OptionsEntry'</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">_message</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Message</span><span class="p">,),</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC901" class="line" lang="python"> <span class="n" style="color: #333;">DESCRIPTOR</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE_<span class="idiff left right">PROTOCOL</span>OPTIONSENTRY</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC900" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">OptionsEntry</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">_reflection</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">GeneratedProtocolMessageType</span></span><span class="p"><span class="idiff">(</span></span><span class="s" style="color: #d14;"><span class="idiff right">'</span>OptionsEntry'</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">_message</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Message</span><span class="p">,),</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC901" class="line" lang="python"> <span class="n" style="color: #333;">DESCRIPTOR</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE_OPTIONSENTRY</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC902" class="line" lang="python"> <span class="n" style="color: #333;">__module__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'downmessage_pb2'</span></span>
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<pre style="margin: 0;">-<span id="LC903" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># @@protoc_insertion_point(class_scope:biomaj.download.DownloadFile.<span class="idiff left right">Protocol</span>OptionsEntry)</span></span>
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<pre style="margin: 0;">+<span id="LC903" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># @@protoc_insertion_point(class_scope:biomaj.download.DownloadFile.OptionsEntry)</span></span>
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<pre style="margin: 0;"> <span id="LC904" class="line" lang="python"> <span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC905" class="line" lang="python"> <span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC906" class="line" lang="python"> <span class="n" style="color: #333;">DESCRIPTOR</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_DOWNLOADFILE</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -912,8 +912,8 @@ _sym_db.RegisterMessage(DownloadFile.Param)</td>
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912
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<pre style="margin: 0;"> <span id="LC912" class="line" lang="python"><span class="n" style="color: #333;">_sym_db</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">RegisterMessage</span><span class="p">(</span><span class="n" style="color: #333;">DownloadFile</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HttpParse</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC913" class="line" lang="python"><span class="n" style="color: #333;">_sym_db</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">RegisterMessage</span><span class="p">(</span><span class="n" style="color: #333;">DownloadFile</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">RemoteFile</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC914" class="line" lang="python"><span class="n" style="color: #333;">_sym_db</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">RegisterMessage</span><span class="p">(</span><span class="n" style="color: #333;">DownloadFile</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Proxy</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC915" class="line" lang="python"><span class="n" style="color: #333;">_sym_db</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">RegisterMessage</span><span class="p">(</span><span class="n" style="color: #333;">DownloadFile</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;"><span class="idiff left right">Protocol</span>OptionsEntry</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC915" class="line" lang="python"><span class="n" style="color: #333;">_sym_db</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">RegisterMessage</span><span class="p">(</span><span class="n" style="color: #333;">DownloadFile</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">OptionsEntry</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC916" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC917" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC918" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_<span class="idiff left right">PROTOCOL</span>OPTIONSENTRY</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_options</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;">+<span id="LC918" class="line" lang="python"><span class="n" style="color: #333;">_DOWNLOADFILE_OPTIONSENTRY</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_options</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;"> <span id="LC919" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># @@protoc_insertion_point(module_scope)</span></span></pre>
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<li id="8e2edce0d507e1297474f25c00cae94258db38d8">
<a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,7 +22,7 @@ config = {</td>
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python"> <span class="s" style="color: #d14;">'url'</span><span class="p">:</span> <span class="s" style="color: #d14;">'http://biomaj.genouest.org'</span><span class="p">,</span></span>
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23
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="python"> <span class="s" style="color: #d14;">'download_url'</span><span class="p">:</span> <span class="s" style="color: #d14;">'http://biomaj.genouest.org'</span><span class="p">,</span></span>
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24
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="python"> <span class="s" style="color: #d14;">'author_email'</span><span class="p">:</span> <span class="s" style="color: #d14;">'olivier.sallou@irisa.fr'</span><span class="p">,</span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="python"> <span class="s" style="color: #d14;">'version'</span><span class="p">:</span> <span class="s" style="color: #d14;">'3.1.<span class="idiff left right">0</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"> <span class="s" style="color: #d14;">'version'</span><span class="p">:</span> <span class="s" style="color: #d14;">'3.1.<span class="idiff left right">2</span>'</span><span class="p">,</span></span>
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26
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"> <span class="s" style="color: #d14;">'classifiers'</span><span class="p">:</span> <span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># How mature is this project? Common values are</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># 3 - Alpha</span></span>
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<a href="https://salsa.debian.org/med-team/biomaj3-download/commit/f29ddc93aae4889e9cf55c477a59e51fd19ea948#a5b5d0c7b9c558d9142a199ec517b633dd40faf5"><strong>tests/biomaj_tests.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -230,7 +230,7 @@ class TestBiomajLocalDownload(unittest.TestCase):</td>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">Exception</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="python"> <span class="n" style="color: #333;">msg</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"In </span><span class="si" style="color: #d14;">%</span><span class="s" style="color: #d14;">s: copy worked but hardlinks were not used."</span> <span class="o" style="font-weight: 600;">%</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">id</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="python"> <span class="n" style="color: #333;">logging</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">info</span><span class="p">(</span><span class="n" style="color: #333;">msg</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">attr</span><span class="p">(</span><span class="s" style="color: #d14;">'network'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">attr</span><span class="p">(</span><span class="s" style="color: #d14;">'http'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">TestBiomajHTTPDownload</span><span class="p">(</span><span class="n" style="color: #333;">unittest</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">TestCase</span><span class="p">):</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -365,7 +365,7 @@ class TestBiomajSFTPDownload(unittest.TestCase):</td>
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<pre style="margin: 0;"> <span id="LC365" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;"> <span id="LC366" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC367" class="line" lang="python"> <span class="n" style="color: #333;">PROTOCOL</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"ftps"</span></span>
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<pre style="margin: 0;">-<span id="LC368" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;"> <span id="LC369" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">setUp</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC370" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">utils</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">UtilsForTest</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC371" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -420,7 +420,7 @@ class TestBiomajDirectFTPSDownload(unittest.TestCase):</td>
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<pre style="margin: 0;"> <span id="LC420" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC421" class="line" lang="python"><span class="s" style="color: #d14;"> Test DirectFTP downloader with FTPS.</span></span>
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<pre style="margin: 0;"> <span id="LC422" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;">-<span id="LC423" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC424" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">setUp</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC425" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">utils</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">UtilsForTest</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC426" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -639,6 +639,20 @@ class TestBiomajFTPDownload(unittest.TestCase):</td>
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<pre style="margin: 0;"> <span id="LC639" class="line" lang="python"> <span class="n" style="color: #333;">ftpd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC640" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">assertTrue</span><span class="p">(</span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">ftpd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">files_to_download</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC641" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC642" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_download_ftp_method</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC643" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">+<span id="LC644" class="line" lang="python"><span class="s" style="color: #d14;"> Test setting ftp_method (it probably doesn't change anything here but we</span></span>
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<pre style="margin: 0;">+<span id="LC645" class="line" lang="python"><span class="s" style="color: #d14;"> test that there is no obvious mistake in the code).</span></span>
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<pre style="margin: 0;">+<span id="LC646" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;">+<span id="LC647" class="line" lang="python"> <span class="n" style="color: #333;">ftpd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">CurlDownload</span><span class="p">(</span><span class="s" style="color: #d14;">"ftp"</span><span class="p">,</span> <span class="s" style="color: #d14;">"test.rebex.net"</span><span class="p">,</span> <span class="s" style="color: #d14;">"/"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC648" class="line" lang="python"> <span class="n" style="color: #333;">ftpd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">set_options</span><span class="p">(</span><span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span><span class="n" style="color: #333;">ftp_method</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"nocwd"</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC649" class="line" lang="python"> <span class="n" style="color: #333;">ftpd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">set_credentials</span><span class="p">(</span><span class="s" style="color: #d14;">"demo:password"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC650" class="line" lang="python"> <span class="p">(</span><span class="n" style="color: #333;">file_list</span><span class="p">,</span> <span class="n" style="color: #333;">dir_list</span><span class="p">)</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ftpd</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">list</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC651" class="line" lang="python"> <span class="n" style="color: #333;">ftpd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">match</span><span class="p">([</span><span class="s" style="color: #d14;">"^readme.txt$"</span><span class="p">],</span> <span class="n" style="color: #333;">file_list</span><span class="p">,</span> <span class="n" style="color: #333;">dir_list</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC652" class="line" lang="python"> <span class="n" style="color: #333;">ftpd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">download</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">utils</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">data_dir</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC653" class="line" lang="python"> <span class="n" style="color: #333;">ftpd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC654" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">assertTrue</span><span class="p">(</span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">ftpd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">files_to_download</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC655" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC656" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC657" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">attr</span><span class="p">(</span><span class="s" style="color: #d14;">'ftps'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC658" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">attr</span><span class="p">(</span><span class="s" style="color: #d14;">'network'</span><span class="p">)</span></span>
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