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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bedtools">Debian Med / bedtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bedtools/commit/13f2a45106ffc5e2c263bcf0bd4503cdd05a2cee">13f2a451</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-01-18T01:44:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bedtools/commit/c1be661e554bfbc781d71ec4e39b5959f8edcb39">c1be661e</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-01-18T01:44:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.29.2+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bedtools/commit/4b053ba5e4353a48765945de5e97bae6f6549ec5">4b053ba5</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-01-18T01:45:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag '2.29.2+dfsg'
Update to upstream version '2.29.2+dfsg'
with Debian dir 4648d5b3f8beaae861eed67b8798c53cc453fa29</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bedtools/commit/217fa5a2dc86e298f21feab35c7ddddb9957fdd7">217fa5a2</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-01-18T01:50:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adjusted patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bedtools/commit/d6f903391a46e1edb96935f70ca6d525cefda8cd">d6f90339</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-01-18T20:40:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Tests fail on 'intersect'
</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
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.github/workflows/main.yml
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
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.travis.yml
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
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<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
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<a href="#7e2c6a8f69d5f4c98b9a6c07bf681f16307a9035">
docs/content/history.rst
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<a href="#0ad0c9480aebc31dd47d0a136ec23871c6059bca">
docs/content/installation.rst
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<a href="#6dd5ed69e2042b1d5a311d0f156d323d18bb1fdf">
src/bamToFastq/bamToFastq.cpp
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<a href="#5273adee83ea252fc53760e8cfe8bd40cac19873">
src/fastaFromBed/fastaFromBed.cpp
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<a href="#898dc17446790e7f390dcd49b54c263b3ef5ace2">
src/fastaFromBed/fastaFromBed.h
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<a href="#b9ac1ef5c06f5a687e8270854d96caaa92e7ad12">
src/fastaFromBed/fastaFromBedMain.cpp
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<a href="#8aa2d388b7cb97933eea172e8ae760393c3a3bfd">
src/flankBed/flankBed.cpp
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src/flankBed/test.fa
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src/flankBed/test.gff
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<a href="#792b5f3184486afec28c7b1e66e0562d3c7bd4be">
src/genomeCoverageBed/genomeCoverageBed.cpp
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<a href="#eb284bdd86cd5f31acd04375cd3ab2f0ed9f013a">
src/genomeCoverageBed/genomeCoverageBed.h
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<a href="#d3f1db841ee576eded5e84abba576e340fc14a21">
src/reldist/reldist.cpp
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<a href="#eb5e5f752ec57124e6a5800ebebe82bfd320184a">
src/slopBed/slopBed.cpp
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<a href="#444559fc3f3d32dd76419cffea49eeb4812c133c">
src/utils/BamTools/include/BamAlignment.hpp
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<a href="#613b32f93251c1907a72ab4bc207c3e7773cd735">
src/utils/BamTools/include/SamHeader.hpp
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<a href="#f1a8a7320fdd5e9ec1a0cfe50befe1396cd7991c">
src/utils/Contexts/ContextBase.cpp
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<a href="#6f747447532d45e279936fe95b7fadc1234babfe">
src/utils/Contexts/ContextBase.h
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<a href="#cac4b8260944c776629ff93fafc582413e61b8a5">
src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.cpp
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<li class="file-stats">
<a href="#2818defb269426338dbc7e48f00363b8466be8c8">
src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.h
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<a href="#5f0a12d841e1a5251a253eca8c8afe4c56d7524b">
src/utils/FileRecordTools/Records/BlockMgr.cpp
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<a href="#0526f58cffcc04be1f251705eeba5f77da294708">
src/utils/FileRecordTools/Records/BlockMgr.h
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<li class="file-stats">
<a href="#ba35273f7701239ffb1e4e7b93000827dd054129">
src/utils/GenomeFile/NewGenomeFile.cpp
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<li class="file-stats">
<a href="#4d3c0ac5511d467074aab9cd0c303e361d0dd279">
src/utils/NewChromsweep/NewChromsweep.cpp
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<h5>The diff was not included because it is too large.</h5>
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