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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/blasr">Debian Med / blasr</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/blasr/commit/2a6e83dd5c818a6143ccf8b6c9a9e854a780b275">2a6e83dd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-22T14:55:56+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/blasr/commit/b189a925ee39835c4708facedf1aa58b71be4590">b189a925</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-01-22T17:44:16+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Versioned Build-Depends: libblasr-dev (>= 5.3.3+dfsg-2)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/blasr/commit/6484173ac633799b7898009afb415db891c2b41c">6484173a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-22T17:48:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt meson patch
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/blasr/commit/f2b2a02acdacfb160a8c9a6c3b41f8a0df0964d9">f2b2a02a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-22T17:51:42+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#699a148889746a2dddf1a6e242a965a12b1f270d">
debian/patches/use_debian_packaged_pblibs.patch
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</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/blasr/compare/5ecea4eee0a07732d936eaf548b91977b35078f1...f2b2a02acdacfb160a8c9a6c3b41f8a0df0964d9#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">blasr (5.3.3+dfsg-4) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Standards-Version: 4.5.0</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Versioned Build-Depends: libblasr-dev (>= 5.3.3+dfsg-2)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Closes: #949543</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 22 Jan 2020 17:48:33 +0100</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">blasr (5.3.3+dfsg-3) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Build-Depends: s/python/python3/</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/blasr/compare/5ecea4eee0a07732d936eaf548b91977b35078f1...f2b2a02acdacfb160a8c9a6c3b41f8a0df0964d9#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,8 +16,8 @@ Build-Depends: debhelper-compat (= 12),</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> libpbdata-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> libpbcopper-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> libgtest-dev,</span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> libblasr-dev (>= 5.3.<span class="idiff left right">1</span>+dfsg-2)</span>
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<td class="diff-line-num old old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4.1</span></span>
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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> libblasr-dev (>= 5.3.<span class="idiff left right">3</span>+dfsg-2)</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.0</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/blasr</span>
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<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/blasr.git</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Homepage: https://github.com/PacificBiosciences/blasr</span>
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<li id="699a148889746a2dddf1a6e242a965a12b1f270d">
<a href="https://salsa.debian.org/med-team/blasr/compare/5ecea4eee0a07732d936eaf548b91977b35078f1...f2b2a02acdacfb160a8c9a6c3b41f8a0df0964d9#699a148889746a2dddf1a6e242a965a12b1f270d"><strong>debian/patches/use_debian_packaged_pblibs.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Description: Add some missing libraries to linker</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- a/meson.build</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/meson.build</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">@@ -51,15 +51,<span class="idiff left right">21</span> @@</span> blasr_thread_dep = dependency('threads',</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -51,15 +51,<span class="idiff left right">19</span> @@</span> blasr_thread_dep = dependency('threads',</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> blasr_boost_dep = dependency('boost', required : true)</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> # pbbam</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,15 +22,13 @@ Description: Add some missing libraries to linker</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-blasr_deps = [blasr_thread_dep, blasr_boost_dep, blasr_pbbam_dep, blasr_libblasr_dep, blasr_zlib_dep]</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# missing libs for linker</span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+samwriter_pbdata_deps = cpp.find_library('pbdata')</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+blasr_pbihdf_deps = cpp.find_library('pbihdf')</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+blasr_pbcopper_deps = cpp.find_library('pbcopper')</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+blasr_deps = [blasr_thread_dep, blasr_boost_dep, blasr_pbbam_dep, blasr_libblasr_dep, blasr_pbcopper_deps, blasr_zlib_dep<span class="idiff left right">, samwriter_pbdata_deps, blasr_pbihdf_deps</span>]</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+blasr_deps = [blasr_thread_dep, blasr_boost_dep, blasr_pbbam_dep, blasr_libblasr_dep, blasr_pbcopper_deps, blasr_zlib_dep]</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"> ########################</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="diff"> # sources + executable #</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="diff"><span class="p">@@ -101,7 +10<span class="idiff left right">7</span>,7 @@</span> blasr_static_impl = static_library(</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="p">@@ -101,7 +10<span class="idiff left right">5</span>,7 @@</span> blasr_static_impl = static_library(</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="diff"> blasr_sources,</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="diff"> install : false,</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="diff"> dependencies : blasr_deps,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,7 +37,7 @@ Description: Add some missing libraries to linker</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="diff"> blasr_main = executable(</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="diff"> 'blasr', [</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="diff"><span class="p">@@ -111,7 +11<span class="idiff left right">7</span>,7 @@</span> blasr_main = executable(</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="p">@@ -111,7 +11<span class="idiff left right">5</span>,7 @@</span> blasr_main = executable(</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="diff"> install : true,</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="diff"> dependencies : blasr_deps,</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="diff"> link_with : blasr_static_impl,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,7 +46,7 @@ Description: Add some missing libraries to linker</td>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="diff"> blasr_utils_sawriter = executable(</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="diff"> 'sawriter', files([</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="diff"><span class="p">@@ -119,7 +12<span class="idiff left right">5</span>,7 @@</span> blasr_utils_sawriter = executable(</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"><span class="p">@@ -119,7 +12<span class="idiff left right">3</span>,7 @@</span> blasr_utils_sawriter = executable(</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="diff"> install : true,</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="diff"> dependencies : blasr_deps,</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="diff"> link_with : blasr_static_impl,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -57,7 +55,7 @@ Description: Add some missing libraries to linker</td>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="diff"> blasr_utils_toAfg = executable(</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="diff"> 'toAfg', files([</span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="diff"><span class="p">@@ -127,7 +13<span class="idiff left right">3</span>,7 @@</span> blasr_utils_toAfg = executable(</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"><span class="p">@@ -127,7 +13<span class="idiff left right">1</span>,7 @@</span> blasr_utils_toAfg = executable(</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="diff"> install : false,</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="diff"> dependencies : blasr_deps,</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="diff"> link_with : blasr_static_impl,</span>
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