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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/galaxy-lib">Debian Med / galaxy-lib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/galaxy-lib/-/commit/d09b1f7695595cce7fadd2a2265c083535e11322">d09b1f76</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-19T13:37:37+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/galaxy-lib/-/commit/4828bdea6375bcbcf12a0a7fe55b6cb919e90b3a">4828bdea</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-19T13:37:38+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 19.5.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/galaxy-lib/-/commit/eb162da9c8c6fa98d705f1dc81e520349bce6c45">eb162da9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-19T13:37:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/19.5.2'
Update to upstream version '19.5.2'
with Debian dir 4e0360f78b69b0af56cd923ae62da172ecb15a58</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/galaxy-lib/-/commit/8717191bab077c6bd520437fb873e272885f5c94">8717191b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-19T13:37:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/galaxy-lib/-/commit/59430ba483c7d5983d76c46f2714e64e4e4f55c6">59430ba4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-19T13:37:42+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.4.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/galaxy-lib/-/commit/f723d5ffcd597d17306dd60e16fd22783f54cb89">f723d5ff</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-19T13:37:45+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Repository.
Fixes lintian: upstream-metadata-file-is-missing
See https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html for more details.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/galaxy-lib/-/commit/2e607b349b34002bdfe4448aa4164b763fd09188">2e607b34</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-19T13:37:46+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove unnecessary Built-Using on python3-galaxy-lib
Fixes lintian: missing-built-using-field-for-golang-package
See https://lintian.debian.org/tags/missing-built-using-field-for-golang-package.html for more details.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/galaxy-lib/-/commit/2c5e22894387659846c10cd42cf0ef849082e771">2c5e2289</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-19T13:50:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cleanup changelog
</pre>
</li>
</ul>
<h4>9 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#4bd9f00d59bedb7647e1197f9e5ad0cab50f7e87">
HISTORY.rst
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<span class="new-file">
+
debian/upstream/metadata
</span>
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<li class="file-stats">
<a href="#1bcabe0aec62dd2b8a1180b7469deae8338de1c8">
docs/galaxy.web.rst
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<li class="file-stats">
<a href="#7733ef00cefbc6c728d6599c8a0f922b9f97793a">
<span class="deleted-file">
−
docs/galaxy.web.stack.rst
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</li>
<li class="file-stats">
<a href="#c7b83755eb6379468aefbd3ffc2a64c23f6e8e84">
galaxy/__init__.py
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<li class="file-stats">
<a href="#890e9c0b6ea13ec937a7f329e637c780ca57941b">
galaxy/tools/deps/conda_util.py
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</li>
</ul>
<h4>Changes:</h4>
<li id="4bd9f00d59bedb7647e1197f9e5ad0cab50f7e87">
<a href="https://salsa.debian.org/med-team/galaxy-lib/-/compare/74e350c7d49dcfc9e46fac880265ccfd4387d40f...2c5e22894387659846c10cd42cf0ef849082e771#4bd9f00d59bedb7647e1197f9e5ad0cab50f7e87"><strong>HISTORY.rst</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,6 +5,12 @@ History</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">.. to_doc</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">---------------------</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">19.5.2.dev0</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">---------------------</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">---------------------</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">19.5.1 (2019-03-03)</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">---------------------</span>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/galaxy-lib/-/compare/74e350c7d49dcfc9e46fac880265ccfd4387d40f...2c5e22894387659846c10cd42cf0ef849082e771#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">galaxy-lib (19.5.<span class="idiff left right">1</span>-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">galaxy-lib (19.5.<span class="idiff left right">2</span>-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial Debianization (Closes: #890061).</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> -- <span class="idiff left right">Michael R. Crusoe <michael.crusoe@gmail.com> Sun, 10 Mar 2019 07:37:49</span> +0100</span></pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- <span class="idiff left right">Andreas Tille <tille@debian.org> Tue, 19 Nov 2019 13:37:46</span> +0100</span></pre>
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<a href="https://salsa.debian.org/med-team/galaxy-lib/-/compare/74e350c7d49dcfc9e46fac880265ccfd4387d40f...2c5e22894387659846c10cd42cf0ef849082e771#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">12</span></pre>
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<a href="https://salsa.debian.org/med-team/galaxy-lib/-/compare/74e350c7d49dcfc9e46fac880265ccfd4387d40f...2c5e22894387659846c10cd42cf0ef849082e771#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Uploaders: Michael R. Crusoe <michael.crusoe@gmail.com>,</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: python</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Testsuite: autopkgtest-pkg-python</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 12~</span>),</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 12</span>),</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dh-python,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> python3-all,</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> python3-docutils,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,7 +20,7 @@ Build-Depends: debhelper (>= 12~),</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> python3-sphinx,</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> python3-recommonmark,</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> python3-sphinx-rtd-theme</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">3.0</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4.1</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/galaxy-lib</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/galaxy-lib.git</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Homepage: https://github.com/galaxyproject/galaxy-lib</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,7 +30,6 @@ Architecture: all</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> ${python3:Depends},</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> ${sphinxdoc:Depends}</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext">Built-Using: ${sphinxdoc:Built-Using}</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">Recommends: ${python3:Recommends}</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">Suggests: ${python3:Suggests}</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">Description: Subset of Galaxy core code base designed to be used</span>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/galaxy-lib/-/compare/74e350c7d49dcfc9e46fac880265ccfd4387d40f...2c5e22894387659846c10cd42cf0ef849082e771#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Repository: https://github.com/galaxyproject/galaxy-lib</span></pre>
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<a href="https://salsa.debian.org/med-team/galaxy-lib/-/compare/74e350c7d49dcfc9e46fac880265ccfd4387d40f...2c5e22894387659846c10cd42cf0ef849082e771#1bcabe0aec62dd2b8a1180b7469deae8338de1c8"><strong>docs/galaxy.web.rst</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">galaxy\.web package</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">===================</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">Subpackages</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">-----------</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">.. toctree::</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> galaxy.web.stack</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Module contents</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">---------------</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/galaxy-lib/-/compare/74e350c7d49dcfc9e46fac880265ccfd4387d40f...2c5e22894387659846c10cd42cf0ef849082e771#7733ef00cefbc6c728d6599c8a0f922b9f97793a"><strong>docs/galaxy.web.stack.rst</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">galaxy\.web\.stack package</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">==========================</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">Module contents</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">---------------</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">.. automodule:: galaxy.web.stack</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> :members:</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> :undoc-members:</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> :show-inheritance:</span></pre>
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<a href="https://salsa.debian.org/med-team/galaxy-lib/-/compare/74e350c7d49dcfc9e46fac880265ccfd4387d40f...2c5e22894387659846c10cd42cf0ef849082e771#c7b83755eb6379468aefbd3ffc2a64c23f6e8e84"><strong>galaxy/__init__.py</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># -*- coding: utf-8 -*-</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="python"><span class="n" style="color: #333;">__version__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'19.5.<span class="idiff left right">1</span>'</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="n" style="color: #333;">__version__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'19.5.<span class="idiff left right">2.dev0</span>'</span></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"></span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"><span class="n" style="color: #333;">PROJECT_NAME</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"galaxy-lib"</span></span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"><span class="n" style="color: #333;">PROJECT_OWNER</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PROJECT_USERAME</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"galaxyproject"</span></span>
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<li id="890e9c0b6ea13ec937a7f329e637c780ca57941b">
<a href="https://salsa.debian.org/med-team/galaxy-lib/-/compare/74e350c7d49dcfc9e46fac880265ccfd4387d40f...2c5e22894387659846c10cd42cf0ef849082e771#890e9c0b6ea13ec937a7f329e637c780ca57941b"><strong>galaxy/tools/deps/conda_util.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,12 +42,9 @@ USE_LOCAL_DEFAULT = False</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">conda_link</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">IS_OS_X</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="python"> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"https://repo.continuum.io/miniconda/Miniconda3-4.<span class="idiff left right">3.31</span>-MacOSX-x86_64.sh"</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"https://repo.continuum.io/miniconda/Miniconda3-4.<span class="idiff left right">6.14</span>-MacOSX-x86_64.sh"</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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47
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">maxsize</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">**</span><span class="mi" style="color: #099;">32</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="python"> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"https://repo.continuum.io/miniconda/Miniconda3-4.3.31-Linux-x86_64.sh"</span></span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="python"> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"https://repo.continuum.io/miniconda/Miniconda3-4.3.31-Linux-x86.sh"</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"> <span class="n" style="color: #333;">url</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"https://repo.continuum.io/miniconda/Miniconda3-4.6.14-Linux-x86_64.sh"</span></span>
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48
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">url</span></span>
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49
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="python"></span>
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50
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="python"></span>
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