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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-vdb">Debian Med / ncbi-vdb</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/198ffbf4ea685a700b6b2ed8554a8f9b01922fbb">198ffbf4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-24T21:47:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">DEP3
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/30f3bc2b0b3b5644fe058eb896d47ec5daceb3a2">30f3bc2b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-24T21:48:45+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/cc86d731480cc73edfded05b5c1b14812e0410fb">cc86d731</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-24T21:48:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.10.3+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/b0c5c5292f19548e7a019d6f8bc609c737cc712b">b0c5c529</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-24T21:49:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.10.3+dfsg'
Update to upstream version '2.10.3+dfsg'
with Debian dir 2c35a236e6593f63c60716a71f24dbe8095515ec</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/798439b3a2cdb3b67bbd70a7bb7e11dd39ea5480">798439b3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-24T21:49:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/3f4d5100804d33ea830850bee324c42c340bec03">3f4d5100</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-24T21:49:22+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Fixes: lintian: upstream-metadata-file-is-missing
See-also: https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/32a38ab9bb036ecb313771a4c2b26c1f5750ac60">32a38ab9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-24T21:52:45+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
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<h4>14 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
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<li class="file-stats">
<a href="#c9512c0b1798e84b5d6a945ad880784dab140a53">
build/Makefile.vers
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#14fb3d6470af84291d1e343b8b569e1f476a1736">
debian/patches/fix_path_mbedtls.patch
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<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
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+
debian/upstream/metadata
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<li class="file-stats">
<a href="#250fc193e8dd90f2513d0d73faaa5a951789e664">
libs/blast/blast-mgr.c
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<li class="file-stats">
<a href="#d5d395be2e602903ad6affac2094cc427eee5c10">
libs/kdb/libkdb.vers.h
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<li class="file-stats">
<a href="#d207f1c18206c231431bd0cf37763d20d1093e76">
libs/klib/release-vers.h
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<li class="file-stats">
<a href="#dd0e8043f3388e0b4e6e7889f109c76d68079099">
libs/ncbi-vdb/libncbi-vdb.vers
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<li class="file-stats">
<a href="#c1f6b70c338ed84a6e47d430ed44bee245d03415">
libs/sraxf/format-spot-name.c
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<li class="file-stats">
<a href="#abfc722060f0a788f926c28e4e30f013df762034">
libs/vdb/libvdb.vers.h
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<li class="file-stats">
<a href="#f6ca27c36bf71bef55cae8d7b6b0a4d2e2569f45">
test/sraxf/Makefile
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<li class="file-stats">
<a href="#f277f70a3a0d0b4c178d63f41e9e1f80605147f8">
<span class="new-file">
+
test/sraxf/test-format_spot_name.cpp
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<h4>Changes:</h4>
<li id="7facec255884dc55d3818e4dfbea89b1bdd7f49e">
<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#7facec255884dc55d3818e4dfbea89b1bdd7f49e"><strong>CHANGES.md</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="markdown"><span class="gh" style="color: #999;"># NCBI External Developer Release:</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="markdown"></span>
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## NCBI VDB 2.10.3</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**February 18, 2020**</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="markdown"> <span class="gs" style="font-weight: 600;">**sraxf**</span>: fixed a problem resulting in a segmentation fault </span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="markdown"></span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="markdown"></span>
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## NCBI VDB 2.10.2</span></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**January 15, 2020**</span></span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="markdown"></span>
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<li id="c9512c0b1798e84b5d6a945ad880784dab140a53">
<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#c9512c0b1798e84b5d6a945ad880784dab140a53"><strong>build/Makefile.vers</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,4 +23,4 @@</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># ===========================================================================</span></span>
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<td class="diff-line-num new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># NCBI-VDB and library version</span></span>
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<td class="diff-line-num new_line old" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="make"><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> 2.10.<span class="idiff left right">2</span></span></pre>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="make"><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> 2.10.<span class="idiff left right">3</span></span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">ncbi-vdb (2.10.<span class="idiff left right">2+dfsg-2) UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">ncbi-vdb (2.10.<span class="idiff left right">3+dfsg-1) unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> [ Steffen Moeller ]</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * New upstream version</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,8 +9,12 @@ ncbi-vdb (2.10.2+dfsg-2) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * Standards-Version: 4.5.0</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Architecture: amd64 i386 x32</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> Closes: #950737</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * New upstream version</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> Repository-Browse.</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Wed, 05 Feb 2020 15:14:08</span> +0100</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Mon, 24 Feb 2020 21:49:23</span> +0100</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">ncbi-vdb (2.9.3+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#14fb3d6470af84291d1e343b8b569e1f476a1736"><strong>debian/patches/fix_path_mbedtls.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Steffen Moeller</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-02-07 00:33:52</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Use Debian packaged mbedtls</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">Index: ncbi-vdb/libs/cloud/aws-auth.c</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-vdb.orig/libs/cloud/aws-auth.c</span></span>
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<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Bug-Database: https://github.com/ncbi/ncbi-vdb/issues</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Bug-Submit: https://github.com/ncbi/ncbi-vdb/issues/new</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Repository: https://github.com/ncbi/ncbi-vdb.git</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Repository-Browse: https://github.com/ncbi/ncbi-vdb</span></pre>
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<li id="250fc193e8dd90f2513d0d73faaa5a951789e664">
<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#250fc193e8dd90f2513d0d73faaa5a951789e664"><strong>libs/blast/blast-mgr.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,7 +50,7 @@</td>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <stdio.h> </span><span class="cm" style="color: #998; font-style: italic;">/* fprintf */</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <string.h> </span><span class="cm" style="color: #998; font-style: italic;">/* memset */</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define TOOLKIT "sratoolkit2_10_<span class="idiff left right">2</span>"</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define TOOLKIT "sratoolkit2_10_<span class="idiff left right">3</span>"</span></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/******************************************************************************/</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="c"></span>
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<li id="d5d395be2e602903ad6affac2094cc427eee5c10">
<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#d5d395be2e602903ad6affac2094cc427eee5c10"><strong>libs/kdb/libkdb.vers.h</strong></a>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define LIBKDB_VERS 0x0207002<span class="idiff left right">2</span></span></span></pre>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define LIBKDB_VERS 0x0207002<span class="idiff left right">3</span></span></span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#d207f1c18206c231431bd0cf37763d20d1093e76"><strong>libs/klib/release-vers.h</strong></a>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* Version of current SRA Toolkit Release */</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define RELEASE_VERS 0x020A000<span class="idiff left right">2</span></span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define RELEASE_VERS 0x020A000<span class="idiff left right">3</span></span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* Type of Version of current SRA Toolkit Release is one of:</span></span>
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<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#dd0e8043f3388e0b4e6e7889f109c76d68079099"><strong>libs/ncbi-vdb/libncbi-vdb.vers</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">2.10.<span class="idiff left right">2</span></span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">2.10.<span class="idiff left right">3</span></span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#c1f6b70c338ed84a6e47d430ed44bee245d03415"><strong>libs/sraxf/format-spot-name.c</strong></a>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * "name_fmt" [ DATA ] - name format string ( see format explanation below )</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * "X" [ DATA ] - X coordinate for spot</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * it's expected to be empty: VDB-4097</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * "Y" [ DATA ] - Y coordinate for spot</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * it's expected to be empty: VDB-4097</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * "spot_name" [ DATA, OPTIONAL ] - potential source of unformatted names</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -91,13 +93,21 @@ rc_t CC format_spot_name ( void *self,</td>
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91
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93
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">sname</span><span class="p">[</span><span class="mi" style="color: #099;">1024</span><span class="p">];</span> <span class="cm" style="color: #998; font-style: italic;">/** name on stack **/</span></span>
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92
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94
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="c"> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">name_fmt</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="kt" style="color: #458; font-weight: 600;">char</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">u</span><span class="p">.</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">base</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">argv</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">u</span><span class="p">.</span><span class="n" style="color: #333;">data</span><span class="p">.</span><span class="n" style="color: #333;">first_elem</span><span class="p">;</span></span>
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93
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95
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">x</span><span class="p">,</span> <span class="n" style="color: #333;">y</span><span class="p">;</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="c"> <span class="n" style="color: #333;">bool</span> <span class="n" style="color: #333;">have_x</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">,</span> <span class="n" style="color: #333;">have_y</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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94
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97
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="c"> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">fmt_size</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">0</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">elem_count</span><span class="p">;</span></span>
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95
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="c"></span>
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96
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99
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/* the coordinates to substitute */</span></span>
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97
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="c"> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">int32_t</span><span class="o" style="font-weight: 600;">*</span> <span class="p">)</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">1</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">base</span> <span class="p">)</span></span>
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98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="c"> <span class="p">[</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">1</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">first_elem</span> <span class="p">];</span></span>
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99
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="c"> <span class="n" style="color: #333;">y</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">int32_t</span><span class="o" style="font-weight: 600;">*</span> <span class="p">)</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">2</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">base</span> <span class="p">)</span></span>
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100
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="c"> <span class="p">[</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">2</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">first_elem</span> <span class="p">];</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="c"> <span class="n" style="color: #333;">have_x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">1</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">elem_count</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="c"> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">1</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">base</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="c"> <span class="n" style="color: #333;">have_y</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">2</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">elem_count</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span></span>
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<td class="diff-line-num new new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="c"> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">2</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">base</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="c"></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">have_x</span> <span class="p">)</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="c"> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">int32_t</span><span class="o" style="font-weight: 600;">*</span> <span class="p">)</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">1</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">base</span> <span class="p">)</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="c"> <span class="p">[</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">1</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">first_elem</span> <span class="p">];</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">have_y</span> <span class="p">)</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="c"> <span class="n" style="color: #333;">y</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">int32_t</span><span class="o" style="font-weight: 600;">*</span> <span class="p">)</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">2</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">base</span> <span class="p">)</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="c"> <span class="p">[</span> <span class="n" style="color: #333;">argv</span> <span class="p">[</span> <span class="mi" style="color: #099;">2</span> <span class="p">]</span> <span class="p">.</span> <span class="n" style="color: #333;">u</span> <span class="p">.</span> <span class="n" style="color: #333;">data</span> <span class="p">.</span> <span class="n" style="color: #333;">first_elem</span> <span class="p">];</span></span>
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101
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="c"></span>
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102
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">fmt_size</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">;){</span></span>
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103
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span> <span class="n" style="color: #333;">name_fmt</span> <span class="p">[</span> <span class="n" style="color: #333;">i</span> <span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">'$'</span> <span class="p">){</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -105,7 +115,7 @@ rc_t CC format_spot_name ( void *self,</td>
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105
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115
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="c"> <span class="k" style="font-weight: 600;">case</span> <span class="sc" style="color: #d14;">'x'</span><span class="p">:</span> <span class="k" style="font-weight: 600;">case</span> <span class="sc" style="color: #d14;">'X'</span><span class="p">:</span></span>
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106
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<td class="diff-line-num new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">sname</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">11</span><span class="p">){</span></span>
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107
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117
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">RC</span> <span class="p">(</span> <span class="n" style="color: #333;">rcXF</span><span class="p">,</span> <span class="n" style="color: #333;">rcFunction</span><span class="p">,</span> <span class="n" style="color: #333;">rcDecoding</span><span class="p">,</span> <span class="n" style="color: #333;">rcBuffer</span><span class="p">,</span> <span class="n" style="color: #333;">rcInsufficient</span> <span class="p">);</span></span>
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108
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<td class="diff-line-num new_line old" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="p"><span class="idiff">(</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">have_x</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">)</span>{</span></span>
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109
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<td class="diff-line-num new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
119
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="c"> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+=</span><span class="mi" style="color: #099;">2</span><span class="p">;</span></span>
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110
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120
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">fmt_size</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">name_fmt</span> <span class="p">[</span> <span class="n" style="color: #333;">i</span> <span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">'%'</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">isdigit</span><span class="p">(</span><span class="n" style="color: #333;">name_fmt</span> <span class="p">[</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span> <span class="p">]))</span> <span class="p">{</span></span>
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111
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121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="c"> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">24</span><span class="o" style="font-weight: 600;">*</span><span class="mi" style="color: #099;">1024</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">name_fmt</span> <span class="p">[</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span> <span class="p">]</span><span class="o" style="font-weight: 600;">-</span><span class="sc" style="color: #d14;">'0'</span><span class="p">);</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -113,11 +123,14 @@ rc_t CC format_spot_name ( void *self,</td>
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113
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123
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="c"> <span class="p">}</span></span>
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114
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124
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="c"> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">+=</span><span class="n" style="color: #333;">sprintf</span><span class="p">(</span><span class="n" style="color: #333;">sname</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">j</span><span class="p">,</span><span class="s" style="color: #d14;">"%d"</span><span class="p">,</span><span class="n" style="color: #333;">x</span><span class="p">);</span></span>
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115
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125
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="c"> <span class="p">}</span></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">RC</span> <span class="p">(</span> <span class="n" style="color: #333;">rcXF</span><span class="p">,</span> <span class="n" style="color: #333;">rcFunction</span><span class="p">,</span> <span class="n" style="color: #333;">rcDecoding</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="c"> <span class="n" style="color: #333;">rcData</span><span class="p">,</span> <span class="n" style="color: #333;">rcNotFound</span> <span class="p">);</span></span>
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116
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="c"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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117
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130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="c"> <span class="k" style="font-weight: 600;">case</span> <span class="sc" style="color: #d14;">'y'</span><span class="p">:</span> <span class="k" style="font-weight: 600;">case</span> <span class="sc" style="color: #d14;">'Y'</span><span class="p">:</span></span>
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118
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">sname</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">11</span><span class="p">){</span></span>
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119
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132
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">RC</span> <span class="p">(</span> <span class="n" style="color: #333;">rcXF</span><span class="p">,</span> <span class="n" style="color: #333;">rcFunction</span><span class="p">,</span> <span class="n" style="color: #333;">rcDecoding</span><span class="p">,</span> <span class="n" style="color: #333;">rcBuffer</span><span class="p">,</span> <span class="n" style="color: #333;">rcInsufficient</span> <span class="p">);</span></span>
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120
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="c"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="p"><span class="idiff">(</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">have_y</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">)</span>{</span></span>
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121
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="c"> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+=</span><span class="mi" style="color: #099;">2</span><span class="p">;</span></span>
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122
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">fmt_size</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">name_fmt</span> <span class="p">[</span> <span class="n" style="color: #333;">i</span> <span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">'%'</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">isdigit</span><span class="p">(</span><span class="n" style="color: #333;">name_fmt</span> <span class="p">[</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span> <span class="p">]))</span> <span class="p">{</span></span>
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123
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136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="c"> <span class="n" style="color: #333;">y</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">24</span><span class="o" style="font-weight: 600;">*</span><span class="mi" style="color: #099;">1024</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">name_fmt</span> <span class="p">[</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span> <span class="p">]</span><span class="o" style="font-weight: 600;">-</span><span class="sc" style="color: #d14;">'0'</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -125,6 +138,9 @@ rc_t CC format_spot_name ( void *self,</td>
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125
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="c"> <span class="p">}</span></span>
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126
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="c"> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">+=</span><span class="n" style="color: #333;">sprintf</span><span class="p">(</span><span class="n" style="color: #333;">sname</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">j</span><span class="p">,</span><span class="s" style="color: #d14;">"%d"</span><span class="p">,</span><span class="n" style="color: #333;">y</span><span class="p">);</span></span>
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127
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="c"> <span class="p">}</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="c"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">RC</span> <span class="p">(</span> <span class="n" style="color: #333;">rcXF</span><span class="p">,</span> <span class="n" style="color: #333;">rcFunction</span><span class="p">,</span> <span class="n" style="color: #333;">rcDecoding</span><span class="p">,</span></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="c"> <span class="n" style="color: #333;">rcData</span><span class="p">,</span> <span class="n" style="color: #333;">rcNotFound</span> <span class="p">);</span></span>
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128
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144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="c"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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129
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145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="c"> <span class="k" style="font-weight: 600;">case</span> <span class="sc" style="color: #d14;">'q'</span><span class="p">:</span> <span class="k" style="font-weight: 600;">case</span> <span class="sc" style="color: #d14;">'Q'</span><span class="p">:</span></span>
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130
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">sname</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">5</span><span class="p">)</span> <span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#abfc722060f0a788f926c28e4e30f013df762034"><strong>libs/vdb/libvdb.vers.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,4 +24,4 @@</td>
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define LIBVDB_VERS 0x0207002<span class="idiff left right">2</span></span></span></pre>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define LIBVDB_VERS 0x0207002<span class="idiff left right">3</span></span></span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#f6ca27c36bf71bef55cae8d7b6b0a4d2e2569f45"><strong>test/sraxf/Makefile</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,6 +29,7 @@ TOP ?= $(abspath ../..)</td>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="make"><span class="nv" style="color: #008080;">MODULE</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">test</span>/sraxf</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="make"><span class="nv" style="color: #008080;">TEST_TOOLS</span> <span class="o" style="font-weight: 600;">=</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="make"> test-format_spot_name <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="make"> test-fix_read_seg <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="make"> test_syn_quality <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="make"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -60,6 +61,20 @@ $(TEST_BINDIR)/test-fix_read_seg: $(SRATEST_OBJ)</td>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="make"> <span class="nv" style="color: #008080;">$(LP)</span> <span class="nt" style="color: #000080;">--exe</span> <span class="nt" style="color: #000080;">-o</span> <span class="nv" style="color: #008080;">$@</span> <span class="nv" style="color: #008080;">$^</span> <span class="nv" style="color: #008080;">$(SRATEST_LIB)</span></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="make"></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#----------------------------------------------------------------</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># test-format_spot_name</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="make"><span class="nv" style="color: #008080;">TFSN_SRC</span> <span class="o" style="font-weight: 600;">=</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="make"> test-format_spot_name</span>
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70
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="make"><span class="nv" style="color: #008080;">TFSN_OBJ</span> <span class="o" style="font-weight: 600;">=</span> <span class="se" style="color: #d14;">\</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="make"> <span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">addsuffix</span> .<span class="nv" style="color: #008080;">$(OBJX)</span>,<span class="nv" style="color: #008080;">$(TFSN_SRC)</span><span class="nf" style="color: #900; font-weight: 600;">)</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="make"></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="make"><span class="nl">$(TEST_BINDIR)/test-format_spot_name</span><span class="o" style="font-weight: 600;">:</span> <span class="nf" style="color: #900; font-weight: 600;">$(TFSN_OBJ)</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="make"> <span class="nv" style="color: #008080;">$(LP)</span> <span class="nt" style="color: #000080;">--exe</span> <span class="nt" style="color: #000080;">-o</span> <span class="nv" style="color: #008080;">$@</span> <span class="nv" style="color: #008080;">$^</span> <span class="nv" style="color: #008080;">$(SRATEST_LIB)</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="make"></span>
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63
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78
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#----------------------------------------------------------------</span></span>
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64
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># test_syn_quality</span></span>
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65
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80
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/64df98737943d7f645010ec30f52d5d52d433e71...32a38ab9bb036ecb313771a4c2b26c1f5750ac60#f277f70a3a0d0b4c178d63f41e9e1f80605147f8"><strong>test/sraxf/test-format_spot_name.cpp</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/*===========================================================================</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * PUBLIC DOMAIN NOTICE</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * National Center for Biotechnology Information</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * This software/database is a "United States Government Work" under the</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * terms of the United States Copyright Act. It was written as part of</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * the author's official duties as a United States Government employee and</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * thus cannot be copyrighted. This software/database is freely available</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * to the public for use. The National Library of Medicine and the U.S.</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * Government have not placed any restriction on its use or reproduction.</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * Although all reasonable efforts have been taken to ensure the accuracy</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * and reliability of the software and data, the NLM and the U.S.</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * Government do not and cannot warrant the performance or results that</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * may be obtained by using this software or data. The NLM and the U.S.</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * Government disclaim all warranties, express or implied, including</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * warranties of performance, merchantability or fitness for any particular</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * purpose.</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * Please cite the author in any work or product based on this material.</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * ===========================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * to add debug arguments to to command line use: "-app_args='-+VFS -s'"</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * ========================================================================== */</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <kapp/args.h> </span><span class="cm" style="color: #998; font-style: italic;">/* Args */</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <kfg/kfg-priv.h> </span><span class="cm" style="color: #998; font-style: italic;">/* KConfigMakeEmpty */</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <ktst/unit_test.hpp> </span><span class="cm" style="color: #998; font-style: italic;">/* TEST_SUITE_WITH_ARGS_HANDLER */</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <vdb/cursor.h> </span><span class="cm" style="color: #998; font-style: italic;">/* VCursorRelease */</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <vdb/database.h> </span><span class="cm" style="color: #998; font-style: italic;">/* VDatabaseRelease */</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <vdb/manager.h> </span><span class="cm" style="color: #998; font-style: italic;">/* VDBManagerRelease */</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <vdb/table.h> </span><span class="cm" style="color: #998; font-style: italic;">/* VTableRelease */</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="cpp"><span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">rc_t</span> <span class="nf" style="color: #900; font-weight: 600;">argsHandler</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">argc</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">argv</span><span class="p">[])</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="cpp"> <span class="n" style="color: #333;">Args</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">args</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="cpp"> <span class="n" style="color: #333;">rc_t</span> <span class="n" style="color: #333;">rc</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ArgsMakeAndHandle</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">args</span><span class="p">,</span> <span class="n" style="color: #333;">argc</span><span class="p">,</span> <span class="n" style="color: #333;">argv</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="cpp"> <span class="n" style="color: #333;">ArgsWhack</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">rc</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="cpp"><span class="n" style="color: #333;">TEST_SUITE_WITH_ARGS_HANDLER</span><span class="p">(</span><span class="n" style="color: #333;">FormatSpotNameSuite</span><span class="p">,</span> <span class="n" style="color: #333;">argsHandler</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="cpp"><span class="n" style="color: #333;">TEST_CASE</span><span class="p">(</span><span class="n" style="color: #333;">TestFormatSpotName</span><span class="p">)</span> <span class="p">{</span> <span class="c1" style="color: #998; font-style: italic;">// VDB-4097</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">VDBManager</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">mgr</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="cpp"> <span class="n" style="color: #333;">REQUIRE_RC</span><span class="p">(</span><span class="n" style="color: #333;">VDBManagerMakeRead</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">mgr</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">));</span></span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">VDatabase</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">db</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="cpp"> <span class="n" style="color: #333;">REQUIRE_RC</span><span class="p">(</span><span class="n" style="color: #333;">VDBManagerOpenDBRead</span><span class="p">(</span><span class="n" style="color: #333;">mgr</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">db</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">,</span> <span class="s" style="color: #d14;">"SRR9203980"</span><span class="p">));</span></span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="cpp"></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">VTable</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">tbl</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="cpp"> <span class="n" style="color: #333;">REQUIRE_RC</span><span class="p">(</span><span class="n" style="color: #333;">VDatabaseOpenTableRead</span><span class="p">(</span><span class="n" style="color: #333;">db</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">tbl</span><span class="p">,</span> <span class="s" style="color: #d14;">"SEQUENCE"</span><span class="p">));</span></span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="cpp"></span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">VCursor</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">curs</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="cpp"> <span class="n" style="color: #333;">REQUIRE_RC</span><span class="p">(</span><span class="n" style="color: #333;">VTableCreateCachedCursorRead</span><span class="p">(</span><span class="n" style="color: #333;">tbl</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">curs</span><span class="p">,</span> <span class="mi" style="color: #099;">256</span> <span class="o" style="font-weight: 600;">*</span> <span class="mi" style="color: #099;">1024</span> <span class="o" style="font-weight: 600;">*</span> <span class="mi" style="color: #099;">1024</span><span class="p">));</span></span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="cpp"> <span class="n" style="color: #333;">REQUIRE_RC</span><span class="p">(</span><span class="n" style="color: #333;">VCursorAddColumn</span><span class="p">(</span><span class="n" style="color: #333;">curs</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">idx</span><span class="p">,</span> <span class="s" style="color: #d14;">"NAME"</span><span class="p">));</span></span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="cpp"> <span class="n" style="color: #333;">REQUIRE_RC</span><span class="p">(</span><span class="n" style="color: #333;">VCursorOpen</span><span class="p">(</span><span class="n" style="color: #333;">curs</span><span class="p">));</span></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="cpp"> <span class="n" style="color: #333;">REQUIRE_RC</span><span class="p">(</span><span class="n" style="color: #333;">VCursorOpenRow</span><span class="p">(</span><span class="n" style="color: #333;">curs</span><span class="p">));</span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="cpp"></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">base</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">boff</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">row_len</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="cpp"> <span class="n" style="color: #333;">REQUIRE_RC</span><span class="p">(</span><span class="n" style="color: #333;">VCursorCellData</span><span class="p">(</span><span class="n" style="color: #333;">curs</span><span class="p">,</span> <span class="n" style="color: #333;">idx</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">base</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">boff</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">row_len</span><span class="p">));</span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="cpp"></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="cpp"> <span class="n" style="color: #333;">REQUIRE_RC</span><span class="p">(</span><span class="n" style="color: #333;">VCursorRelease</span><span class="p">(</span><span class="n" style="color: #333;">curs</span><span class="p">));</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="cpp"></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="cpp"> <span class="n" style="color: #333;">REQUIRE_RC</span><span class="p">(</span><span class="n" style="color: #333;">VTableRelease</span><span class="p">(</span><span class="n" style="color: #333;">tbl</span><span class="p">));</span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="cpp"></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="cpp"> <span class="n" style="color: #333;">REQUIRE_RC</span><span class="p">(</span><span class="n" style="color: #333;">VDatabaseRelease</span><span class="p">(</span><span class="n" style="color: #333;">db</span><span class="p">));</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="cpp"> <span class="n" style="color: #333;">REQUIRE_RC</span><span class="p">(</span><span class="n" style="color: #333;">VDBManagerRelease</span><span class="p">(</span><span class="n" style="color: #333;">mgr</span><span class="p">));</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="cpp"><span class="p">}</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="cpp"></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="cpp"><span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">UsageDefaultName</span><span class="p">[]</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"test-format-spot-name"</span><span class="p">;</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="cpp"><span class="n" style="color: #333;">rc_t</span> <span class="n" style="color: #333;">CC</span> <span class="nf" style="color: #900; font-weight: 600;">UsageSummary</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">progname</span><span class="p">)</span> <span class="p">{</span> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="p">}</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="cpp"><span class="n" style="color: #333;">rc_t</span> <span class="n" style="color: #333;">CC</span> <span class="nf" style="color: #900; font-weight: 600;">Usage</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">Args</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">args</span><span class="p">)</span> <span class="p">{</span> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="p">}</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="cpp"></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="cpp"><span class="k" style="font-weight: 600;">extern</span> <span class="s" style="color: #d14;">"C"</span> <span class="p">{</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="cpp"></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="cpp"> <span class="n" style="color: #333;">ver_t</span> <span class="n" style="color: #333;">CC</span> <span class="n" style="color: #333;">KAppVersion</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">void</span><span class="p">)</span> <span class="p">{</span> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="p">}</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="cpp"></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">KMain</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">argc</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">argv</span><span class="p">[])</span> <span class="p">{</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="cpp"> <span class="n" style="color: #333;">KConfigDisableUserSettings</span><span class="p">();</span> <span class="c1" style="color: #998; font-style: italic;">// ignore ~/.ncbi/user-settings.mkfg</span></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="cpp"></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="cpp"> <span class="n" style="color: #333;">rc_t</span> <span class="n" style="color: #333;">rc</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">FormatSpotNameSuite</span><span class="p">(</span><span class="n" style="color: #333;">argc</span><span class="p">,</span> <span class="n" style="color: #333;">argv</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">rc</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="cpp"> <span class="p">}</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/******************************************************************************/</span></span></pre>
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