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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/557a7097293f204a9da01ecf3ac2531d4d074621">557a7097</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-02-13T18:28:46+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/99a638ad65170192d5f54dec9e9ae5089aafe494">99a638ad</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-02-13T18:28:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/bb00ca14a86ddaea37b9b0cb39c38faa287bb36b">bb00ca14</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-02-13T18:29:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.2.0'
Update to upstream version '1.2.0'
with Debian dir cf614210b0eb5077add95797c3b0b4653694cfad</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/5b2d838e40a1f71ed2057582bcc05373791d952c">5b2d838e</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-02-13T18:29:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/8ef4b99137291d4d82b5cec1a976bcc6c5543bdd">8ef4b991</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-02-13T18:29:57+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">R-U: Trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/7bdd850fbd389787279cb7419dadca33e7b05332">7bdd850f</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-02-13T18:29:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">R-U: Trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/96a48ef0e0cec7c5572ce0b884f316cac9c528b7">96a48ef0</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-02-13T18:29:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">R-U: Trailing whitespace in debian/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/08acd416c15fb3190d448330abf3922d29c9d3c3">08acd416</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-02-13T18:30:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/09fd5891716b69348207c2c3fc67cd92d59fa844">09fd5891</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-02-25T17:20:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Preparing upload.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/b5b9b7df5a1eed234d2ed63c0c4a77bae1611b27">b5b9b7df</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-02-25T17:23:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'master' of salsa.debian.org:med-team/bcbio
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#d30b04166486087de34ff05cf278d3dd2ddd2360">
HISTORY.md
</a>
</li>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
</a>
</li>
<li class="file-stats">
<a href="#fb17eef4888c4f7198909ebc1616eb92a3fed380">
bcbio/chipseq/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#e058999dc6b36492007fce47afb7a70ca8b25e3d">
bcbio/chipseq/atac.py
</a>
</li>
<li class="file-stats">
<a href="#4eabad8cbe351e3e3d7466ee25d9d970b164368a">
bcbio/chipseq/macs2.py
</a>
</li>
<li class="file-stats">
<a href="#fbfb96675c481efdacfedf0214b473e7d623d79c">
bcbio/chipseq/peaks.py
</a>
</li>
<li class="file-stats">
<a href="#1b659f58ae5c6fb1faeab633dcdd75182ee896da">
bcbio/cwl/hpc.py
</a>
</li>
<li class="file-stats">
<a href="#fee19f4f498a2b34eca43fa79376fa526f252577">
bcbio/heterogeneity/chromhacks.py
</a>
</li>
<li class="file-stats">
<a href="#cb1999524a51a97bd40da890cd301d883550f995">
bcbio/install.py
</a>
</li>
<li class="file-stats">
<a href="#bbb7842f2be9690f4ae67a1de2c07f322d6e261e">
bcbio/ngsalign/star.py
</a>
</li>
<li class="file-stats">
<a href="#3bc78861325eafbcc6318a5fe975950a26142070">
bcbio/pipeline/datadict.py
</a>
</li>
<li class="file-stats">
<a href="#6b0954b64bb7025f3d13cbef18622daa684dbe1a">
bcbio/pipeline/main.py
</a>
</li>
<li class="file-stats">
<a href="#37887cb2aa9aaaab061447bcf9b787795063503d">
bcbio/pipeline/qcsummary.py
</a>
</li>
<li class="file-stats">
<a href="#28669a7ddccdf8ac47c577727840379bba16c871">
bcbio/pipeline/rnaseq.py
</a>
</li>
<li class="file-stats">
<a href="#6a5842dd9e3c5daac8e6d62a34e4d60ab86b78bf">
bcbio/pipeline/run_info.py
</a>
</li>
<li class="file-stats">
<a href="#bac37f8d6cefe5fea359e390c31a86b6b2bb084b">
bcbio/pipeline/sra.py
</a>
</li>
<li class="file-stats">
<a href="#9e1db37d57ea57b0838bc2ccd6bf3efc9a2741d3">
bcbio/provenance/system.py
</a>
</li>
<li class="file-stats">
<a href="#85d06fa335415666c32065e161f62b08957235b4">
<span class="new-file">
+
bcbio/qc/atac.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#bfbe53ab819ad89e524434a4a58e068b24fbc04e">
bcbio/qc/chipseq.py
</a>
</li>
<li class="file-stats">
<a href="#0b928052acb70b506a8457627983f038aaf8fd4d">
bcbio/qc/multiqc.py
</a>
</li>
<li class="file-stats">
<a href="#502b944957c2fd2ecfd36202eedbe9cf048674c0">
bcbio/qc/variant.py
</a>
</li>
<li class="file-stats">
<a href="#8e6f90f2a59b2c56551cae4988c2493fdbc6cdd3">
bcbio/rnaseq/arriba.py
</a>
</li>
<li class="file-stats">
<a href="#6270e912e55ff9c93038ac7341b3a29df00cc7a1">
bcbio/rnaseq/bcbiornaseq.py
</a>
</li>
<li class="file-stats">
<a href="#5bc7769f3f38355000e265e7cd0f29abe33c412c">
bcbio/rnaseq/gtf.py
</a>
</li>
<li class="file-stats">
<a href="#0287de35830dbdcc13313ba0df6b5ba5e4cb9ab7">
bcbio/rnaseq/salmon.py
</a>
</li>
<li class="file-stats">
<a href="#7d53800404c69ee56b2303a3da8e615968f726ac">
bcbio/structural/lumpy.py
</a>
</li>
<li class="file-stats">
<a href="#953a5484c194dec73486a5e85ad272cd898cbf31">
bcbio/upload/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#4a2d47a21c0a96d7fdf1cc3749bf934812edc5a5">
bcbio/variation/coverage.py
</a>
</li>
<li class="file-stats">
<a href="#4d8eb696f9cb2d722697111ebcb7af7007cdea24">
bcbio/variation/gatkjoint.py
</a>
</li>
<li class="file-stats">
<a href="#fec9d7963bbe58487ab78f91a021afb62bdba04f">
bcbio/variation/peddy.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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