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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/cyvcf2">Debian Med / cyvcf2</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/cyvcf2/-/commit/f70b6513a9575929831bfff9ad8de2fa8af3252a">f70b6513</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-02-25T14:57:30+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.11.6</pre>
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<h4>5 changed files:</h4>
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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<li class="file-stats">
<a href="#2fbcc692367300b0691462028f2e5f9bcaaf0945">
cyvcf2/__init__.py
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<a href="#164dc8610052ecd4fe73493df7bd8d4346cc2aa4">
cyvcf2/cyvcf2.pyx
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<a href="#93a704c090be71ad063e2454ed35149fdfc2a0f2">
cyvcf2/relatedness.h
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<a href="#aded7756cdea7c289134466a0d54da4f26d43abb">
docs/source/conf.py
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<h4>Changes:</h4>
<li id="dea01dd89a3b602828e630677fde5d77c06441c8">
<a href="https://salsa.debian.org/med-team/cyvcf2/-/commit/f70b6513a9575929831bfff9ad8de2fa8af3252a#dea01dd89a3b602828e630677fde5d77c06441c8"><strong>.travis.yml</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="yaml"><span class="na" style="color: #008080;">language</span><span class="pi">:</span> <span class="s" style="color: #d14;">python</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">dist</span><span class="pi">:</span> <span class="s" style="color: #d14;"><span class="idiff left right">xenial</span></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">dist</span><span class="pi">:</span> <span class="s" style="color: #d14;"><span class="idiff left right">bionic</span></span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="yaml"><span class="na" style="color: #008080;">python</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">2.7"</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="yaml"> <span class="pi">-</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.5"</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="yaml"> <span class="pi">-</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.6"</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="yaml"> <span class="pi">-</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.7"</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="yaml"> <span class="pi">-</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.8"</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="yaml"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="yaml"><span class="na" style="color: #008080;">install</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">sudo apt-get install libcurl4-openssl-dev</span></span>
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<li id="2fbcc692367300b0691462028f2e5f9bcaaf0945">
<a href="https://salsa.debian.org/med-team/cyvcf2/-/commit/f70b6513a9575929831bfff9ad8de2fa8af3252a#2fbcc692367300b0691462028f2e5f9bcaaf0945"><strong>cyvcf2/__init__.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,4 +2,4 @@ from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness,</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"> <span class="n" style="color: #333;">par_het</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="python"><span class="n" style="color: #333;">Reader</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">VCFReader</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">VCF</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="python"><span class="n" style="color: #333;">__version__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"0.11.<span class="idiff left right">5</span>"</span></span></pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"><span class="n" style="color: #333;">__version__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"0.11.<span class="idiff left right">6</span>"</span></span></pre>
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<li id="164dc8610052ecd4fe73493df7bd8d4346cc2aa4">
<a href="https://salsa.debian.org/med-team/cyvcf2/-/commit/f70b6513a9575929831bfff9ad8de2fa8af3252a#164dc8610052ecd4fe73493df7bd8d4346cc2aa4"><strong>cyvcf2/cyvcf2.pyx</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1126,7 +1126,7 @@ cdef class Variant(object):</td>
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1126
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<pre style="margin: 0;"> <span id="LC1126" class="line" lang="cython"> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">hets</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">vcf</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">n_samples</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">alt_freqs</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">])</span></span>
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1127
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<pre style="margin: 0;"> <span id="LC1127" class="line" lang="cython"></span>
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1128
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1128
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<pre style="margin: 0;"> <span id="LC1128" class="line" lang="cython"> <span class="nb" style="color: #0086b3;">property</span> <span class="n" style="color: #333;">num_called</span><span class="p">:</span></span>
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1129
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<pre style="margin: 0;">-<span id="LC1129" class="line" lang="cython"> <span class="s" style="color: #d14;">"number of samples that were not UKNOWN."</span></span>
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1129
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<pre style="margin: 0;">+<span id="LC1129" class="line" lang="cython"> <span class="s" style="color: #d14;">"number of samples that were not U<span class="idiff left right">N</span>KNOWN."</span></span>
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1130
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1130
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<pre style="margin: 0;"> <span id="LC1130" class="line" lang="cython"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__get__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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1131
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1131
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<pre style="margin: 0;"> <span id="LC1131" class="line" lang="cython"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_gt_types</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">NULL</span><span class="p">:</span></span>
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1132
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1132
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<pre style="margin: 0;"> <span id="LC1132" class="line" lang="cython"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">gt_types</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1142,7 +1142,7 @@ cdef class Variant(object):</td>
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1142
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1142
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<pre style="margin: 0;"> <span id="LC1142" class="line" lang="cython"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">n</span></span>
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1143
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1143
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<pre style="margin: 0;"> <span id="LC1143" class="line" lang="cython"></span>
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1144
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1144
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<pre style="margin: 0;"> <span id="LC1144" class="line" lang="cython"> <span class="nb" style="color: #0086b3;">property</span> <span class="n" style="color: #333;">call_rate</span><span class="p">:</span></span>
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1145
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<pre style="margin: 0;">-<span id="LC1145" class="line" lang="cython"> <span class="s" style="color: #d14;">"proprtion of samples that were not UKNOWN."</span></span>
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1145
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<pre style="margin: 0;">+<span id="LC1145" class="line" lang="cython"> <span class="s" style="color: #d14;">"proprtion of samples that were not U<span class="idiff left right">N</span>KNOWN."</span></span>
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1146
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1146
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<pre style="margin: 0;"> <span id="LC1146" class="line" lang="cython"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__get__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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1147
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1147
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<pre style="margin: 0;"> <span id="LC1147" class="line" lang="cython"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">vcf</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">n_samples</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span><span class="p">:</span></span>
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1148
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<pre style="margin: 0;"> <span id="LC1148" class="line" lang="cython"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">float</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">num_called</span><span class="p">)</span> <span class="o" style="font-weight: 600;">/</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">vcf</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">n_samples</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1394,7 +1394,7 @@ cdef class Variant(object):</td>
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1394
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<pre style="margin: 0;"> <span id="LC1394" class="line" lang="cython"> <span class="nb" style="color: #0086b3;">property</span> <span class="n" style="color: #333;">gt_types</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC1395" class="line" lang="cython"> <span class="s" style="color: #d14;">"""gt_types returns a numpy array indicating the type of each sample.</span></span>
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1396
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<pre style="margin: 0;"> <span id="LC1396" class="line" lang="cython"></span>
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<pre style="margin: 0;">-<span id="LC1397" class="line" lang="cython"><span class="s" style="color: #d14;"> HOM_REF=0, HET=1. For `gts012=True` HOM_ALT=2, UKNOWN=3</span></span>
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<pre style="margin: 0;">+<span id="LC1397" class="line" lang="cython"><span class="s" style="color: #d14;"> HOM_REF=0, HET=1. For `gts012=True` HOM_ALT=2, U<span class="idiff left right">N</span>KNOWN=3</span></span>
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1398
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<pre style="margin: 0;"> <span id="LC1398" class="line" lang="cython"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;"> <span id="LC1399" class="line" lang="cython"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">__get__</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC1400" class="line" lang="cython"> <span class="k" style="font-weight: 600;">cdef</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">ndst</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">ngts</span><span class="p">,</span> <span class="n" style="color: #333;">n</span><span class="p">,</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">nper</span><span class="p">,</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span></span>
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<a href="https://salsa.debian.org/med-team/cyvcf2/-/commit/f70b6513a9575929831bfff9ad8de2fa8af3252a#93a704c090be71ad063e2454ed35149fdfc2a0f2"><strong>cyvcf2/relatedness.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,7 @@</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define _UNKNOWN 3</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="c"><span class="c1" style="color: #998; font-style: italic;">// internal calculate of alternate allele frequency.</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="c"><span class="kr" style="font-weight: 600;">inline</span> <span class="kt" style="color: #458; font-weight: 600;">float</span> <span class="nf" style="color: #900; font-weight: 600;">aaf</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">gt_types</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">int32_t</span> <span class="n" style="color: #333;">n_samples</span><span class="p">){</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="c"><span class="k" style="font-weight: 600;"><span class="idiff left">static</span></span><span class="idiff right"> </span><span class="kr" style="font-weight: 600;">inline</span> <span class="kt" style="color: #458; font-weight: 600;">float</span> <span class="nf" style="color: #900; font-weight: 600;">aaf</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">gt_types</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">int32_t</span> <span class="n" style="color: #333;">n_samples</span><span class="p">){</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">float</span> <span class="n" style="color: #333;">af</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">n_called</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="c"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -134,7 +134,7 @@ int related(int *gt_types, double *asum, int32_t *N, int32_t *ibs0, int32_t *ibs</td>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="c"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="c"><span class="c1" style="color: #998; font-style: italic;">// returns 1 if this is a usable site.</span></span>
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="c"><span class="kr" style="font-weight: 600;">inline</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="nf" style="color: #900; font-weight: 600;">ab_ok</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span> <span class="n" style="color: #333;">ab</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">ab_missing</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="c"><span class="k" style="font-weight: 600;"><span class="idiff left">static</span></span><span class="idiff right"> </span><span class="kr" style="font-weight: 600;">inline</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="nf" style="color: #900; font-weight: 600;">ab_ok</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span> <span class="n" style="color: #333;">ab</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">ab_missing</span><span class="p">)</span> <span class="p">{</span></span>
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">ab_missing</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="c"> <span class="p">}</span></span>
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<a href="https://salsa.debian.org/med-team/cyvcf2/-/commit/f70b6513a9575929831bfff9ad8de2fa8af3252a#aded7756cdea7c289134466a0d54da4f26d43abb"><strong>docs/source/conf.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,6 +14,7 @@</td>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">os</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">re</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># If extensions (or modules to document with autodoc) are in another directory,</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># add these directories to sys.path here. If the directory is relative to the</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -60,13 +61,20 @@ author = u'Brent Pedersen'</td>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># built documents.</span></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#sys.path.insert(0, os.path.join(os.path.dirname(__file__), "../../"))</span></span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#import cyvcf2</span></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="python"><span class="n" style="color: #333;">init_file</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">abspath</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="python"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">__file__</span><span class="p">),</span> <span class="s" style="color: #d14;">"../../cyvcf2/__init__.py"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="python"><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="python"><span class="k" style="font-weight: 600;">with</span> <span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">init_file</span><span class="p">,</span> <span class="s" style="color: #d14;">'r'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">f</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="python"> <span class="n" style="color: #333;">version_file</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">f</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">read</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="python"> <span class="n" style="color: #333;">version_match</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">re</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">search</span><span class="p">(</span><span class="s" style="color: #d14;">r"^__version__ = ['\"]([^'\"]*)['\"]"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="python"> <span class="n" style="color: #333;">version_file</span><span class="p">,</span> <span class="n" style="color: #333;">re</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">M</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">version_match</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="python"> <span class="n" style="color: #333;">pkg_version</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">version_match</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">group</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># The short X.Y version.</span></span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="python"><span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;"><span class="idiff left right">u'0.6.5'</span></span></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="python"><span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">pkg_version</span></span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># The full version, including alpha/beta/rc tags.</span></span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="python"><span class="n" style="color: #333;">release</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;"><span class="idiff left right">u'0.6.5'</span></span></span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="python"><span class="n" style="color: #333;">release</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">pkg_version</span></span></span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># The language for content autogenerated by Sphinx. Refer to documentation</span></span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># for a list of supported languages.</span></span>
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