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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/vg">Debian Med / vg</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/9cce33a4753d7e45c8bd198b607d630bd41b7bea">9cce33a4</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-02-24T11:24:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">try without gperftools
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/2a6c16ee2df2fc4e3be05bd5cfefd3152f659aa1">2a6c16ee</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-02-24T11:24:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">autopkgtests: skip if the vg or libvcflib-tools package is not avialable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/927e0423f2f32e9bacf90c2864507756bef45b76">927e0423</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-02-24T11:24:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">vg-docs: mark Multi-Arch: foreign
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/6a5e427a3bf828b3f3201f5904419c3c5a585d34">6a5e427a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-02-24T11:24:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/ef1222784d5fa0e7704f1a466ac6289a5abe06b3">ef122278</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-02-24T11:32:14+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop unnecessary dependency on dh-autoreconf.
Fixes: lintian: useless-autoreconf-build-depends
See-also: https://lintian.debian.org/tags/useless-autoreconf-build-depends.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/820edd733d4c0289fa4efe398736528e9533bc0b">820edd73</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-02-25T19:51:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Put vg-docs package in the "doc" section
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/98099fc2f6ea468623beec40e8636aa10b2734b7">98099fc2</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-02-25T19:51:10+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release 1.21.0+ds2-4
</pre>
</li>
</ul>
<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
</a>
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</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/vg/-/compare/b3a2be41686d481ee396afd626b8ea50a5635e56...98099fc2f6ea468623beec40e8636aa10b2734b7#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">vg (1.21.0+ds2-4) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Try without gperftools</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * autopkgtests: skip if the vg or libvcflib-tools package is not avialable</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * vg-docs: mark Multi-Arch: foreign</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Standards-Version: 4.5.0 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Drop unnecessary dependency on dh-autoreconf.</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Put vg-docs package in the "doc" section</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Sat, 15 Feb 2020 09:42:27 +0100</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">vg (1.21.0+ds2-3) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Only run the tests on arch dependent builds</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/vg/-/compare/b3a2be41686d481ee396afd626b8ea50a5635e56...98099fc2f6ea468623beec40e8636aa10b2734b7#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,7 +31,6 @@ Build-Depends: debhelper-compat (= 12),</td>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> bison,</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> flex,</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> gawk,</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> libgoogle-perftools-dev,</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> liblz4-dev,</span>
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36
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35
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> liblzma-dev,</span>
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37
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36
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> libcairo2-dev,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -64,7 +63,7 @@ Build-Depends: debhelper-compat (= 12),</td>
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64
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"># redland-utils, # not needed?</span>
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65
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64
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext">Build-Depends-Indep: doxygen <!nodoc>,</span>
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66
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65
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> graphviz <!nodoc></span>
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67
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4.1</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.0</span></span>
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68
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/vg</span>
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69
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68
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/vg.git</span>
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70
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69
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext">Homepage: https://github.com/vgteam/vg#vg</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -93,6 +92,8 @@ Description: tools for working with genome variation graphs</td>
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93
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92
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"></span>
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94
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext">Package: vg-docs</span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext">Section: doc</span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext">Multi-Arch: foreign</span>
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96
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext">Depends: ${misc:Depends}</span>
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97
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext">Description: tools for working with genome variation graphs -- docs</span>
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98
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> variation graph data structures, interchange formats, alignment, genotyping,</span>
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<br>
</li>
<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/vg/-/compare/b3a2be41686d481ee396afd626b8ea50a5635e56...98099fc2f6ea468623beec40e8636aa10b2734b7#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,7 +14,7 @@ prefix=$(CURDIR)/debian/$(DEB_SOURCE)/usr</td>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">libexecdir=$(prefix)/lib/$(DEB_SOURCE)</span>
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> dh $@<span class="idiff left right"> --with autoreconf</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">override_dh_autoreconf:</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> dh_autoreconf --sourcedirectory=$(CURDIR)/deps/vowpal_wabbit</span>
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<a href="https://salsa.debian.org/med-team/vg/-/compare/b3a2be41686d481ee396afd626b8ea50a5635e56...98099fc2f6ea468623beec40e8636aa10b2734b7#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Test-Command: vg test</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Depends: vg, libvcflib-tools</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr<span class="idiff left right">, skip-not-installable</span></span></pre>
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