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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b5f36ade774a89883615bb5552dee6f28f6f3a8b">b5f36ade</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-26T01:45:50+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b5f36ade774a89883615bb5552dee6f28f6f3a8b#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Tue, 25 Feb 2020 13</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Wed, 26 Feb 2020 01</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------</span>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b5f36ade774a89883615bb5552dee6f28f6f3a8b#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Tue, 25 Feb 2020 13:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Wed, 26 Feb 2020 01:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,6 @@ Last-Update: Tue, 25 Feb 2020 13:42:04 +0000</td>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> bbmap | 38.73 | 38.79 | Andreas Tille | Andreas Tille | 2019-11-22 21:04:16+00</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> bcbio | 1.1.9 | 1.2.0 | Steffen Moeller | Michael R. Crusoe | 2020-02-14 17:19:16+00</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> beast2-mcmc | 2.6.0 | 2.6.1 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00</span>
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12
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> biobambam2 | 2.0.153 | 2.0.156+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> biojava-live | 1.7.1 | 1.9.3 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2018-11-12 15:49:23+00</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,7 +17,6 @@ Last-Update: Tue, 25 Feb 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> clonalframeml | 1.11 | 1.12 | Andreas Tille | Andreas Tille | 2019-05-23 07:03:34+00</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> cwltool | 2.0.20200126090152 | 2.0.20200219182542 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-14 12:34:12+00</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> cyvcf2 | 0.11.5 | 0.11.6 | Liubov Chuprikova,Steffen Moeller | Michael R. Crusoe | 2020-02-18 15:49:35+00</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> elastix | 4.9.0 | 5.0.0 | Gert Wollny,Steve M. Robbins | Andreas Tille | 2019-01-15 11:50:11+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -65,7 +63,6 @@ Last-Update: Tue, 25 Feb 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> python-cobra | 0.14.2 | 0.17.1 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200211.116b09f | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00</span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> python-pbcore | 1.7.1+git20200129.c55621e | 1.7.1+git20200206.d66cbbf | Andreas Tille | Andreas Tille | 2020-01-31 16:20:15+00</span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00</span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> python-schema-salad | 5.0.20200126033820 | 5.0.20200220195218 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-14 12:34:49+00</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> python-treetime | 0.7.1 | 0.7.4 | Andreas Tille | Steffen Moeller | 2020-01-18 20:52:48+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -83,7 +80,7 @@ Last-Update: Tue, 25 Feb 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00</span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00</span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext">(<span class="idiff left right">81</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext">(<span class="idiff left right">78</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> source | id | severity | title </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -234,7 +231,6 @@ Last-Update: Tue, 25 Feb 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> pynast | 948081 | serious | pynast build depends on and recommends the removed blast2 transitional package</span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> python-biom-format | 820060 | normal | python-biom-format: broken on big-endian architectures</span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> python-biom-format | 950929 | normal | python-biom-format: FTBFS with pandas 1.0: test failures</span>
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="plaintext"> python-cobra | 951690 | serious | src:python-cobra: fails to migrate to testing for too long</span>
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<td class="diff-line-num old_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
238
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234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> python-cogent | 950474 | important | python-cogent FTBFS on armel and i386: test failures</span>
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<td class="diff-line-num old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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235
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> python-intervaltree-bio | 920545 | serious | python-intervaltree breaks python-intervaltree-bio autopkgtest</span>
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<td class="diff-line-num old_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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236
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> python-mne | 733270 | wishlist | please provide python-mne-doc package</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -271,6 +267,9 @@ Last-Update: Tue, 25 Feb 2020 13:42:04 +0000</td>
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<td class="diff-line-num old_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
271
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext"> sofa-framework | 735099 | normal | sofa-framework: FTBFS on sparc, powerpc (and ia64)</span>
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<td class="diff-line-num old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="plaintext"> sofa-framework | 875184 | serious | [sofa-framework] Future Qt4 removal from Buster</span>
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<td class="diff-line-num old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"> spades | 853113 | normal | spades: Fails to build with unhelpful error message in a "low" memory machine</span>
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<td class="diff-line-num new old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext"> spdlog | 951960 | serious | purify: FTBFS: ld: ../purify/libpurify.so.2.0.0: undefined reference to `fmt::v6::internal::basic_data<void>::signs'</span>
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext"> spdlog | 951995 | serious | sopt: FTBFS: core.h:266: undefined reference to `fmt::v6::internal::assert_fail(char const*, int, char const*)'</span>
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext"> spdlog | 952543 | serious | Using old libfmt breaks sopt and purify</span>
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<td class="diff-line-num old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> sprai | 943280 | normal | sprai: Python2 removal in sid/bullseye</span>
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<td class="diff-line-num old_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"> sra-sdk | 943231 | normal | sra-sdk: Python2 removal in sid/bullseye</span>
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<td class="diff-line-num old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> sumaclust | 952093 | serious | sumaclust: FTBFS: mtcompare_sumaclust.c:18:10: fatal error: libfasta/sequence.h: No such file or directory</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -284,5 +283,5 @@ Last-Update: Tue, 25 Feb 2020 13:42:04 +0000</td>
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283
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="plaintext"> xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation</span>
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<td class="diff-line-num old_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="plaintext"> xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"</span>
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="plaintext"> xmedcon | 924017 | normal | desktop entry</span>
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="plaintext">(19<span class="idiff left right">6</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="plaintext">(19<span class="idiff left right">8</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext"></span></pre>
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