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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bustools">Debian Med / Bustools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bustools/-/commit/488004cbdbc139f7925a820bc0480ae14d5fd488">488004cb</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-02-27T00:48:26+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Iteration of changes to merge efforts.
</pre>
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<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#68e0b13744e158347bfd74ebaaca667435f07d14">
<span class="new-file">
+
debian/manpages
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</a>
</li>
<li class="file-stats">
<a href="#c6818e44c8684c5b713d9dc813f65e86facd9cac">
<span class="new-file">
+
debian/patches/add_lto.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
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+
debian/salsa-ci.yml
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
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+
debian/upstream/metadata
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/bustools/-/commit/488004cbdbc139f7925a820bc0480ae14d5fd488#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">bustools (0.40.0-2) UNRELEASED; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Merged parallel packaging effort. (Closes: #952658)</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> - Added link-time optimisation</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> - Added man page</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Thu, 27 Feb 2020 00:45:57 +0100</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">bustools (0.40.0-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Initial release. Closes: #950922</span>
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</li>
<li id="68e0b13744e158347bfd74ebaaca667435f07d14">
<a href="https://salsa.debian.org/med-team/bustools/-/commit/488004cbdbc139f7925a820bc0480ae14d5fd488#68e0b13744e158347bfd74ebaaca667435f07d14"><strong>debian/manpages</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">bustools.1</span></pre>
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<li id="c6818e44c8684c5b713d9dc813f65e86facd9cac">
<a href="https://salsa.debian.org/med-team/bustools/-/commit/488004cbdbc139f7925a820bc0480ae14d5fd488#c6818e44c8684c5b713d9dc813f65e86facd9cac"><strong>debian/patches/add_lto.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gh" style="color: #999;">Index: bustools/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- bustools.orig/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ bustools/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">@@ -12,6 +12,9 @@</span> endif()</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> if(CMAKE_BUILD_TYPE MATCHES Debug)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> message("debug mode")</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> add_compile_options(-g)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ add_compile_options(-flto)</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ set(CMAKE_SHARED_LINKER_FLAGS "-flto")</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ set(CMAKE_EXE_LINKER_FLAGS "-flto")</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> else(CMAKE_BUILD_TYPE MATCHES Debug)</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> if(CMAKE_BUILD_TYPE MATCHES Profile)</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> message("profile mode")</span></pre>
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<a href="https://salsa.debian.org/med-team/bustools/-/commit/488004cbdbc139f7925a820bc0480ae14d5fd488#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">inject_hardening_flags_cmake.patch</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">add_lto.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/bustools/-/commit/488004cbdbc139f7925a820bc0480ae14d5fd488#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,3 +10,12 @@ DH_AUTO_CONFIGURE_OPTS := -DCMAKE_BUILD_TYPE=Debug</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">override_dh_auto_configure:</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dh_auto_configure -- $(DH_AUTO_CONFIGURE_OPTS)</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> dh_auto_build</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> help2man ./obj-x86_64-linux-gnu/src/bustools > bustools.1</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> dh_auto_clean</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> rm -f bustools.1</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"></span></pre>
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<a href="https://salsa.debian.org/med-team/bustools/-/commit/488004cbdbc139f7925a820bc0480ae14d5fd488#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="c1" style="color: #998; font-style: italic;"># For more information on what jobs are run see:</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="c1" style="color: #998; font-style: italic;"># https://salsa.debian.org/salsa-ci-team/pipeline</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/bustools/-/commit/488004cbdbc139f7925a820bc0480ae14d5fd488#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Registry:</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> - Name: conda:bioconda</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Entry: bustools</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> - Name: OMICtools</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Entry: OMICS_33004</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> - Name: bio.tools</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Entry: BUStools</span></pre>
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