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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/smrtanalysis">Debian Med / smrtanalysis</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/smrtanalysis/-/commit/90333c26e08d4eb092da4867e8cbf226bf9ef6e3">90333c26</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T10:02:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Afif removed himself from Uploaders, Add myself to Uploaders
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/smrtanalysis/-/commit/528b6597d89b5ca3559398dc5e9476b87bee0ae0">528b6597</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T10:03:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Move all packages affected by Python2 removal bugs to Suggests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/smrtanalysis/-/commit/e68ed3d5196a2be467f877d4c5b1d2628bdd3439">e68ed3d5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T10:03:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/smrtanalysis/-/commit/6be503737088458b9b92e7415afd2ea8d1adde28">6be50373</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T10:03:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/smrtanalysis/-/commit/46fb2cc0bf780964f6736b8410308ff4f70e30fc">46fb2cc0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T10:03:46+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">R-U: Trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/smrtanalysis/-/commit/9ab39513436973414d2b02c57e3d13f6a517156e">9ab39513</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T10:03:46+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">R-U: Trailing whitespace in debian/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/smrtanalysis/-/commit/d371347fadabe2eca8a3c119d0f9de58f782289e">d371347f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T10:03:46+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/smrtanalysis/-/commit/ee67939bc3224e5f92054ea76e5b21542486817d">ee67939b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T10:03:50+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in Homepage field.
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/smrtanalysis/-/commit/47385dd4721fb0bd93be2cba954ad9d3955000a9">47385dd4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T10:03:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright).</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/smrtanalysis/-/commit/ab80f3d091b34e5c08bcd3e0abb7673c9bb7606a">ab80f3d0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T10:04:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/smrtanalysis/-/compare/d25eddc1eecca4c414c5d74af2eb3602efabb1b5...ab80f3d091b34e5c08bcd3e0abb7673c9bb7606a#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">smrtanalysis (0~20200227) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Afif removed himself from Uploaders</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Add myself to Uploaders</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Move all packages affected by Python2 removal bugs to Suggests</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Closes: #945737</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Standards-Version: 4.5.0 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * debhelper-compat 12 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Remove trailing whitespace in debian/copyright (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Remove trailing whitespace in debian/rules (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Use secure URI in Homepage field.</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Remove obsolete field Name from debian/upstream/metadata (already</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> present in machine-readable debian/copyright).</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 27 Feb 2020 10:03:51 +0100</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">smrtanalysis (0~20180814) unstable; urgency=medium</span>
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2
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span>
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3
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> * Team upload.</span>
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<a href="https://salsa.debian.org/med-team/smrtanalysis/-/compare/d25eddc1eecca4c414c5d74af2eb3602efabb1b5...ab80f3d091b34e5c08bcd3e0abb7673c9bb7606a#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<a href="https://salsa.debian.org/med-team/smrtanalysis/-/compare/d25eddc1eecca4c414c5d74af2eb3602efabb1b5...ab80f3d091b34e5c08bcd3e0abb7673c9bb7606a#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Source: smrtanalysis</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Uploaders: Andreas Tille <tille@debian.org></span>
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3
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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4
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11~</span>)</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2</span>.0</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 12</span>)</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5</span>.0</span>
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7
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/smrtanalysis</span>
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8
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/smrtanalysis.git</span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Homepage: http://www.pacb.com/products-and-services/analytical-software/smrt-analysis/</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Homepage: http<span class="idiff left right">s</span>://www.pacb.com/products-and-services/analytical-software/smrt-analysis/</span>
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10
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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11
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Package: smrtanalysis</span>
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12
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Architecture: all</span>
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13
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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14
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> pbbamtools,</span>
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15
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<td class="diff-line-num new_line old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> pbh5tools,</span>
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16
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<td class="diff-line-num new_line old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> pbbarcode,</span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<td class="diff-line-num new_line old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> pbalign,</span>
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18
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> blasr,</span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> pbdagcon,</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> pbgenomicconsensus,</span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> kineticstools,</span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> falcon</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> pbdagcon</span>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">Suggests: pbh5tools,</span>
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<td class="diff-line-num new old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> pbbarcode,</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> pbalign,</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> pbgenomicconsensus,</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> kineticstools,</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> falcon</span>
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23
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<td class="diff-line-num new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Description: software suite for single molecule, real-time sequencing</span>
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<td class="diff-line-num old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
24
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<td class="diff-line-num new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> SMRT® Analysis is a powerful, open-source bioinformatics software suite</span>
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25
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> available for analysis of DNA sequencing data from Pacific Biosciences’</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,15 +35,15 @@ Package: smrtanalysis-dev</td>
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34
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">Architecture: all</span>
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35
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext">Section: libdevel</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> python-pbcore,</span>
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38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> python-pbcommand,</span>
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<td class="diff-line-num old old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
39
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> python-pbconsensuscore | python3-pbconsensuscore,</span>
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40
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> python-pbgenomicconsensus,</span>
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<td class="diff-line-num old old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
41
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> python-pbh5tools,</span>
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<td class="diff-line-num old old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
42
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> python-pbalign,</span>
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<td class="diff-line-num old old_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
43
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> python-kineticstools,</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> python3-pbcore,</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> python3-pbcommand,</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> python3-pbconsensuscore,</span>
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> libpbseq-dev,</span>
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42
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> libpbbam-dev</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">Suggests: python-pbgenomicconsensus,</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> python-pbh5tools,</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> python-pbalign,</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> python-kineticstools,</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext">Description: develepment libraries for smrtanalysis</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> SMRT® Analysis is a powerful, open-source bioinformatics software suite</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> available for analysis of DNA sequencing data from Pacific Biosciences’</span>
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<a href="https://salsa.debian.org/med-team/smrtanalysis/-/compare/d25eddc1eecca4c414c5d74af2eb3602efabb1b5...ab80f3d091b34e5c08bcd3e0abb7673c9bb7606a#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,13 +19,13 @@ License: BSD-3-Clause</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> without specific prior written permission.</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE HOLDERS OR</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/smrtanalysis/-/compare/d25eddc1eecca4c414c5d74af2eb3602efabb1b5...ab80f3d091b34e5c08bcd3e0abb7673c9bb7606a#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,4 +3,4 @@</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">#export DH_VERBOSE = 1</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> dh $@<span class="idiff left right"> </span></span></pre>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> dh $@</span></pre>
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<li id="b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<a href="https://salsa.debian.org/med-team/smrtanalysis/-/compare/d25eddc1eecca4c414c5d74af2eb3602efabb1b5...ab80f3d091b34e5c08bcd3e0abb7673c9bb7606a#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/smrtanalysis/-/compare/d25eddc1eecca4c414c5d74af2eb3602efabb1b5...ab80f3d091b34e5c08bcd3e0abb7673c9bb7606a#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Name: SMRT Analysis</span>
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2
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Registry:</span>
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3
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"> - Name: OMICtools</span>
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4
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Entry: OMICS_05142</span>
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