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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c7c9ef3bc3870ef5dc69bed89ff640140a48dbd7">c7c9ef3b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T13:45:30+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c7c9ef3bc3870ef5dc69bed89ff640140a48dbd7#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 27 Feb 2020 <span class="idiff left right">01:42:03</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 27 Feb 2020 <span class="idiff left right">13:42:04</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">1</span> | {imaging,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">9</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 3<span class="idiff left right">8 | {his,laboratory,oncology,practice,imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">0</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">0</span> | {imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">7</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 3<span class="idiff left right">7 | {his,imaging,practice,oncology,laboratory</span>} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> cfflib | 35 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dcm2niix | 33 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> amide | 3<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> amide | 3<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicomscope | 25 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> medicalterms | 2<span class="idiff left right">5</span> | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> medicalterms | 2<span class="idiff left right">4</span> | {tools} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> htsjdk | 19 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gnumed-server | 17 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> gdcm | 16 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> ngs-sdk | 13 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> adun.app | 12 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> insighttoolkit4 | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> invesalius | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> minc-tools | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> jebl2 | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> king | 9 | {<span class="idiff left right">imaging,typesett</span>ing} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> king | 9 | {<span class="idiff left right">typesetting,imag</span>ing} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> mia | 9 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> tree-puzzle | 9 | {bio<span class="idiff left right">-phylogeny,bio</span>,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> tree-puzzle | 9 | {bio<span class="idiff left right">,bio-phylogeny</span>,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> vtk-dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> gdcm | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> biojava-live | 7 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> fastlink | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> melting | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> fastlink | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> melting | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> ncbi-seg | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> norsp | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> obitools | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> psychopy | 7 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> maqview | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> ncbi-entrez-direct | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> openslide | 6 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> orthanc-webviewer | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> sortmerna | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> staden | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> cgview | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> dicompyler | 5 | {oncology} | </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> embassy-domainatrix | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> embassy-domainatrix | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> freecontact | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> ipig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> jaligner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> king-probe | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> libdivsufsort | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> mapsembler2 | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> mipe | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> ncbi-entrez-direct | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> neobio | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> mipe | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> neobio | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> ngs-sdk | 5 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> o<span class="idiff left right">penslide | 5 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> o<span class="idiff left right">rthanc-webviewer | 5 | {imaging} </span> | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> sibsim4 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> sigma-align | 5 | {bio,bio-phylogeny,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> ampliconnoise | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> ampliconnoise | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> anfo | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> arden | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> bandage | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> brig | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> cgview | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> cluster3 | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> dazzdb | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> diamond-aligner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> ea-utils | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -70,22 +69,23 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> estscan | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> gatb-core | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> ghmm | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> idba | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> idba | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> indelible | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> jellyfish1 | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> lagan | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> mlv-smile | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> openslide | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> orthanc-dicomweb | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> paml | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="plaintext"> phyutility | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> phyutility | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> predictprotein | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> prime-phylo | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> pymia | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> seqtools | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> squizz | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> squizz | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> transtermhp | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> treeview | 4 | {bio-phylogeny,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -98,12 +98,12 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> bio-tradis | 3 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> blasr | 3 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> bppsuite | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> brig | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> canu | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="plaintext"> cluster3 | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> delly | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> ecopcr | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> elph | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> embassy-domsearch | 3 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> embassy-domsearch | 3 | {<span class="idiff left right">cloud,bio</span>} | </span>
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> fitgcp | 3 | {cloud,bio} | </span>
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> gasic | 3 | {cloud,bio} | </span>
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -112,12 +112,12 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> libsbml | 3 | {bio-dev} | </span>
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> lucy | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> mauve-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="plaintext"> mhap | 3 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> mhap | 3 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> microbegps | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> mrs | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> paraclu | 3 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> paraclu | 3 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> perm | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext"> proalign | 3 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> proalign | 3 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> probabel | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> qrisk2 | 3 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> radiant | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -138,15 +138,15 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> baitfisher | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> bart-view | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> beads | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="plaintext"> beast-mcmc | 2 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> beast-mcmc | 2 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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142
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> bio-rainbow | 2 | {bio} | </span>
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> bitseq | 2 | {bio} | </span>
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144
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144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> centrifuge | 2 | {bio} | </span>
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145
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145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> clonalframeml | 2 | {bio} | </span>
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146
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> clonalorigin | 2 | {bio} | </span>
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147
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147
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> codonw | 2 | {bio} | </span>
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148
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="plaintext"> cufflinks | 2 | {<span class="idiff left right">bio,cloud</span>} | </span>
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149
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="plaintext"> daligner | 2 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> cufflinks | 2 | {<span class="idiff left right">cloud,bio</span>} | </span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> daligner | 2 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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150
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> dascrubber | 2 | {bio} | </span>
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151
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> dindel | 2 | {bio} | </span>
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> dwgsim | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -156,7 +156,7 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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156
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156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> harvest-tools | 2 | {bio} | </span>
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> hinge | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> igor | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="plaintext"> jmodeltest | 2 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"> jmodeltest | 2 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> lamarc | 2 | {bio} | </span>
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161
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> libgff | 2 | {bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> libpal-java | 2 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -179,7 +179,7 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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179
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> rampler | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> rdp-classifier | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> relion | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="plaintext"> rtax | 2 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> rtax | 2 | {<span class="idiff left right">cloud,bio</span>} | </span>
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> runcircos-gui | 2 | {bio} | </span>
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> samblaster | 2 | {bio} | </span>
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> scythe | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -197,7 +197,7 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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197
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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198
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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199
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> edflib | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="plaintext"> embassy-phylip | 1 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"> embassy-phylip | 1 | {<span class="idiff left right">cloud,bio</span>} | </span>
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201
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> emmax | 1 | {bio} | </span>
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202
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> freebayes | 1 | {bio} | </span>
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203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> hunspell-en-med | 1 | {tools} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -243,7 +243,7 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> sumaclust | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> surankco | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> tnseq-transit | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC246" class="line" lang="plaintext"> tree-puzzle | 1 | {<span class="idiff left right">cloud,bio,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="plaintext"> tree-puzzle | 1 | {<span class="idiff left right">bio,bio-phylogeny,cloud</span>} | </span>
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247
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247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> varscan | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -297,13 +297,14 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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297
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297
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="plaintext"> opensurgsim | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="plaintext"> oscar | 0 | {tools,<span class="idiff left right">data,practice</span>} | </span>
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="plaintext"> oscar | 0 | {tools,<span class="idiff left right">practice,data</span>} | </span>
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="plaintext"> papyrus | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="plaintext"> python-deeptools | 0 | {bio<span class="idiff left right">,bio-dev</span>} | </span>
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="plaintext"> python-py2bit | 0 | {bio<span class="idiff left right">,bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="plaintext"> python-deeptools | 0 | {bio<span class="idiff left right">-dev,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="plaintext"> python-py2bit | 0 | {bio<span class="idiff left right">-dev,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC306" class="line" lang="plaintext"> python-pyani | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="plaintext"> python-tinyalign | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC308" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC310" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -317,5 +318,5 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC318" class="line" lang="plaintext"> trim-galore | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC319" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC320" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC320" class="line" lang="plaintext">(34<span class="idiff left right">7</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="plaintext">(34<span class="idiff left right">8</span> rows)</span>
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<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c7c9ef3bc3870ef5dc69bed89ff640140a48dbd7#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 27 Feb 2020 <span class="idiff left right">01:42:03</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 27 Feb 2020 <span class="idiff left right">13:42:04</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -49,17 +49,19 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> mothur | 1.42.1 | 1.43.0 | Andreas Tille,Steffen Moeller,Tomasz Buchert | Andreas Tille | 2019-08-01 19:09:05+00</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> ncbi-entrez-direct | 12.0.20190816 | 13.5.20200221 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> nibabel | 2.5.1 | 3.0.1 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-20 10:35:09+00</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00</span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> pbh5tools | 0.8.0+git20170929.58d54ff | 0.8.0+git20181212.9fa8fc4 | Afif Elghraoui | Andreas Tille | 2018-07-13 14:49:05+00</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> picard-tools | 2.18.25 | 2.21.9 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00</span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> plink2 | 2.00~a3-200217 | 20022<span class="idiff left right">2</span> | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> plink2 | 2.00~a3-200217 | 20022<span class="idiff left right">5</span> | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> prokka | 1.14.5 | 1.14.6 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-04 11:00:31+00</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00</span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00</span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> python-bids-validator | 1.2.4 | 1.4.2 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00</span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> python-cgecore | 1.5.2 | 1.5.3 | Andreas Tille | Steffen Moeller | 2020-01-06 17:05:53+00</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> python-cobra | 0.14.2 | 0.17.1 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00</span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00</span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200211.116b09f | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -80,7 +82,7 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00</span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00</span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext">(<span class="idiff left right">78</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext">(<span class="idiff left right">80</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> source | id | severity | title </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -274,7 +276,7 @@ Last-Update: Thu, 27 Feb 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"> sofa-framework | 735099 | normal | sofa-framework: FTBFS on sparc, powerpc (and ia64)</span>
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="plaintext"> sofa-framework | 875184 | serious | [sofa-framework] Future Qt4 removal from Buster</span>
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="plaintext"> spades | 853113 | normal | spades: Fails to build with unhelpful error message in a "low" memory machine</span>
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="plaintext"> spdlog | 952625 | serious | libspdlog-dev: <span class="idiff left right">.pc Requires: fmt which doesn't have a .pc file, breaking pkg-config on spdlog.pc</span></span>
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext"> spdlog | 952625 | serious | libspdlog-dev: <span class="idiff left right">needs to Depend on libfmt-dev (>= 6.1.2+ds-1) (Requires: fmt)</span></span>
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="plaintext"> sprai | 943280 | normal | sprai: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="plaintext"> sra-sdk | 943231 | normal | sra-sdk: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="plaintext"> sra-sdk | 952623 | serious | sra-sdk: FTBFS: ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `vdb_mbedtls_entropy_init'</span>
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