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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bbmap">Debian Med / bbmap</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/387e550357f15a1058c887e1ed0bae282b6fceed">387e5503</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T11:27:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/7e91981b0ab5e8b846887672e866fca0617bbcaf">7e91981b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T11:27:55+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 38.79+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/6676b63ae79846a3a9f9338470358c18bef643d0">6676b63a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T11:28:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/38.79+dfsg'
Update to upstream version '38.79+dfsg'
with Debian dir 77a61c145ab2652f2f6088be08698f2aa7550b2d</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/ca80f0459f2b1f0baf2f69d80cf779fb3ad13efb">ca80f045</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T11:28:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/01fe0066cde0998b9c51c267588ae0083a8e64dd">01fe0066</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T11:28:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/092306bceed430b5cd31b75a754de5b7afd19825">092306bc</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-02-27T11:34:46+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#bb99c91dddf712324948bb77e4432bafdd07bfe2">
addssu.sh
</a>
</li>
<li class="file-stats">
<a href="#70ece5ceb58ce3dc03585afe3fe150863cc9937a">
<span class="new-file">
+
alltoall.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#7e2cf62aef5bb9049babfe918c48f0e4eeea20c4">
<span class="new-file">
+
analyzesketchresults.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#57363d0830f19d81c2022a5eb5019ed7ab89fe0a">
bbmap.sh
</a>
</li>
<li class="file-stats">
<a href="#4b63b37dab60774805e9df6a6e84649fc9edc937">
bbwrap.sh
</a>
</li>
<li class="file-stats">
<a href="#3a1986fa996843fd189501d65900ee801c1a9bf2">
calcmem.sh
</a>
</li>
<li class="file-stats">
<a href="#d4a77f7446e8b2574d3bafe6219a1bfcf5c2d06e">
callgenes.sh
</a>
</li>
<li class="file-stats">
<a href="#595053368d8170ce2fc06b4f43eb36f103f53195">
comparesketch.sh
</a>
</li>
<li class="file-stats">
<a href="#3eff31978688e06b1a6faeae5dfe6239d33729f0">
<span class="new-file">
+
comparessu.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#253a206cb08d757a947a7184d38b6f79645cf90f">
consensus.sh
</a>
</li>
<li class="file-stats">
<a href="#be7260b2e2b4ab59dbd69285dbc941c2cbcff3af">
current/align2/AbstractMapper.java
</a>
</li>
<li class="file-stats">
<a href="#8023a4926ea3329eac15850095fd011835c0606d">
current/align2/BBMap.java
</a>
</li>
<li class="file-stats">
<a href="#62b97e902920c150ab4ef1adf802e2702176e6f7">
current/align2/BBSplitter.java
</a>
</li>
<li class="file-stats">
<a href="#32ca876b08317068631c0e33c7fe64dde4a90b72">
current/align2/BBWrap.java
</a>
</li>
<li class="file-stats">
<a href="#f782d3f5f2a0caac382364db133ebecf2eb318b5">
current/align2/RandomReads3.java
</a>
</li>
<li class="file-stats">
<a href="#f413b9b3f0027b1b898e651da67113f317b49e70">
current/pacbio/Aligner.java
→
current/aligner/Aligner.java
</a>
</li>
<li class="file-stats">
<a href="#c3be17f96a1b9951d676925b385b04298f732307">
current/prok/Alignment.java
→
current/aligner/Alignment.java
</a>
</li>
<li class="file-stats">
<a href="#d5bab4e63058adc6b96401d2c627bfe702871450">
current/pacbio/AlignmentResult.java
→
current/aligner/AlignmentResult.java
</a>
</li>
<li class="file-stats">
<a href="#14f30e18717d2fc09a1eba6235981a2fe1a4e216">
<span class="new-file">
+
current/aligner/AllToAll.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#c514f3c05d5f98c6a05d380ba952af33f66f0221">
current/pacbio/FlatAligner.java
→
current/aligner/FlatAligner.java
</a>
</li>
<li class="file-stats">
<a href="#1bc2235f7b8c8389abf69635e1d4782f594c7aac">
current/pacbio/MultiStateAligner9PacBioAdapter.java
→
current/aligner/MultiStateAligner9PacBioAdapter.java
</a>
</li>
<li class="file-stats">
<a href="#b88930a860a5fed0975a87d69857fb38ed050d50">
current/pacbio/MultiStateAligner9PacBioAdapter2.java
→
current/aligner/MultiStateAligner9PacBioAdapter2.java
</a>
</li>
<li class="file-stats">
<a href="#c172994428d2c40b0303789fd1104f72ec227af1">
current/pacbio/MultiStateAligner9PacBioAdapter3.java
→
current/aligner/MultiStateAligner9PacBioAdapter3.java
</a>
</li>
<li class="file-stats">
<a href="#31b229138a4e93441015f4a14a43a853f860c067">
current/pacbio/MultiStateAligner9PacBioAdapter_WithBarriers.java
→
current/aligner/MultiStateAligner9PacBioAdapter_WithBarriers.java
</a>
</li>
<li class="file-stats">
<a href="#ed84242e04d407c1580047b828656660ad4d8380">
current/pacbio/SingleStateAlignerFlat.java
→
current/aligner/SingleStateAlignerFlat.java
</a>
</li>
<li class="file-stats">
<a href="#8ae1d758006d32236c91f5856595b2b10154b6d4">
current/pacbio/SingleStateAlignerFlat2.java
→
current/aligner/SingleStateAlignerFlat2.java
</a>
</li>
<li class="file-stats">
<a href="#6660d119f0e00e9f7472b9ec6f14e167085723a4">
current/pacbio/SingleStateAlignerFlat2Amino.java
→
current/aligner/SingleStateAlignerFlat2Amino.java
</a>
</li>
<li class="file-stats">
<a href="#b2f71649edefca3a69a2c5303b40ffcc37cde84a">
current/pacbio/SingleStateAlignerFlat2_1D.java
→
current/aligner/SingleStateAlignerFlat2_1D.java
</a>
</li>
<li class="file-stats">
<a href="#341ba547ea7f7724e3dffdfafcaf87f8719932ce">
<span class="new-file">
+
current/aligner/SingleStateAlignerFlat3.java
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777;">
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<a href="https://salsa.debian.org/med-team/bbmap/-/compare/258ce1dc979a313307ee93326ad8764f4d9c1902...092306bceed430b5cd31b75a754de5b7afd19825">View it on GitLab</a>.
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