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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/salmon">Debian Med / salmon</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/ac6af4dba73ed24ff8a510dc148c04d81693fd33">ac6af4db</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2020-02-28T17:04:26+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1.0+ds1</pre>
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<h4>30 changed files:</h4>
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<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#141aa6159adb6f6c9bd9eaaab8525e06bfa097b8">
cmake/SimpleTest.cmake
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<li class="file-stats">
<a href="#34ffb03041dc818ba71da0518ec52a0134f543f8">
current_version.txt
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<li class="file-stats">
<a href="#5a1b92f4d2201f84f3ab9bfe7917ee0a5531e53d">
doc/source/alevin.rst
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<li class="file-stats">
<a href="#9d4e8ab62832d7b298261aae1fe1123d28783525">
doc/source/conf.py
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<li class="file-stats">
<a href="#87a3a9314333c591d8bda7edee40ff4857d72464">
doc/steps_to_prepare_release.md
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<li class="file-stats">
<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61">
docker/Dockerfile
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<li class="file-stats">
<a href="#3cbc10c17d78796adbdc9a8a8b8702f83a02d41f">
docker/build_test.sh
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<li class="file-stats">
<a href="#bde78d1844ec01264c5d4743a583c958c681b010">
include/AlevinHash.hpp
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<li class="file-stats">
<a href="#2bc7c7c64784b968b1404d3f09805fe683f980b1">
include/AlevinOpts.hpp
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<li class="file-stats">
<a href="#1fe0f4d55f3b84573f46c3b205cdf1546c6f1595">
include/AlevinUtils.hpp
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<li class="file-stats">
<a href="#2e23205aa6b7180cee9b484cea2bddaefafb2251">
include/BarcodeModel.hpp
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<li class="file-stats">
<a href="#ba21e28a4a0fb90d1a8bc698ffc1d6360721d2ef">
include/CollapsedCellOptimizer.hpp
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<li class="file-stats">
<a href="#9ae77fd7e7a3184b0ef7ca225128fc21e47e2238">
include/DedupUMI.hpp
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<li class="file-stats">
<a href="#b6523e842fc0e8f9ae82ea74712d3b1b704c917d">
<span class="deleted-file">
−
include/Filter.hpp
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<li class="file-stats">
<a href="#f05db237f9b821f31941b5ede8a2c432d8736b61">
include/GZipWriter.hpp
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<li class="file-stats">
<a href="#584b1766692e6054a45025e3ab2a1cc01e4508f1">
include/ReadExperiment.hpp
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<li class="file-stats">
<a href="#b28e1098f756957ff90d12768200c4e9602817b4">
include/SalmonConfig.hpp
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<li class="file-stats">
<a href="#44e448f604f7e82906787f365f589a3ea4657ba9">
include/SalmonDefaults.hpp
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<li class="file-stats">
<a href="#775cca6353faebf70ff10a2f9d1684153c93c4ac">
include/SalmonIndex.hpp
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<li class="file-stats">
<a href="#169f7f7cc7108d2c0f64e35e7ee01f7912f6dd93">
include/SalmonMappingUtils.hpp
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<li class="file-stats">
<a href="#2eeada36706cad6f17cb60346f7d2f9f4b479a7b">
include/SalmonOpts.hpp
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<li class="file-stats">
<a href="#d9225c32d4f01af48593b4d164c0276ef713fb37">
scripts/fetchPufferfish.sh
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<li class="file-stats">
<a href="#8fdbe631bc12d59b3cea9274359041cf09b11240">
src/Alevin.cpp
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<li class="file-stats">
<a href="#9fcb6347f66e2015a27d89eec62944e82352b5d9">
src/AlevinHash.cpp
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<li class="file-stats">
<a href="#d95dc025bfe71cabe95139b51ea263244f8cbab2">
src/AlevinUtils.cpp
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<li class="file-stats">
<a href="#2d5e0752f505025e2570ff24aee737c61f0ebcdd">
src/BuildSalmonIndex.cpp
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<li class="file-stats">
<a href="#631c8d07f5ea23b9a9f6c57f5389dfcf94bc33b7">
src/CMakeLists.txt
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<li class="file-stats">
<a href="#4d255e86e1e69399b0a00c7213bf7ae26df399d4">
src/CollapsedCellOptimizer.cpp
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<h5>The diff was not included because it is too large.</h5>
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