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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c0424c803e01a43ce31d5765ed5d298a08ffb3c9">c0424c80</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-02T13:44:37+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c0424c803e01a43ce31d5765ed5d298a08ffb3c9#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 02 Mar 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 02 Mar 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> dcmtk | 172 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 95 | {practice,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> gdcm | 46 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> dcm2niix | 37 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> orthanc-wsi | 37 | {oncology,imaging,his,laboratory,practice} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dcm2niix | 36 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> cfflib | 35 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> amide | 32 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 26 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> amide | 33 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicomscope | 27 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> medicalterms | 26 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">3</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> htsjdk | 2<span class="idiff left right">2</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> htsjdk | 2<span class="idiff left right">3</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gdcm | 17 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gnumed-server | 17 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> ngs-sdk | 13 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> adun.app | 12 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> in<span class="idiff left right">sighttoolkit4 | 12 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> in<span class="idiff left right">vesalius | 12 | {imaging} </span> | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> invesalius | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> king | 11 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> minc-tools | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> <span class="idiff left right">plastimatch | 10 | {imaging} </span> | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> <span class="idiff left right">vtk-dicom | 10 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> <span class="idiff left right">king | 10 | {imaging,typesetting}</span> | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> <span class="idiff left right">insighttoolkit4 | 9 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> jebl2 | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> mia | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> tree-puzzle | 9 | {bio,bio-phylogeny,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> vtk-dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> biojava-live | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> gdcm | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> obitools | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> fastlink | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> psychopy | 8 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> librg-utils-perl | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> melting | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> ncbi-entrez-direct | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> openslide | 7 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> psychopy | 7 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> arden | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> cgview | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> dicompyler | 6 | {oncology} | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> jaligner | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> fastlink | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> maqview | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> melting | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> mipe | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> ncbi-seg | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> ngs-sdk | 6 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> <span class="idiff left right">norsp | 6 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> <span class="idiff left right">openslide | 6 | {imaging}</span> | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> orthanc-webviewer | 6 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> cluster3 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> dazzdb | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> dicompyler | 5 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> embassy-domainatrix | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> estscan | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> gasic | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> idba | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> ipig | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> king-probe | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> <span class="idiff left right">mapsembler2 | 5 | {cloud,bio}</span> | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> n<span class="idiff left right">eobio | 5 | {bio,cloud}</span> | </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> <span class="idiff left right">ncbi-seg | 5 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> n<span class="idiff left right">orsp | 5 | {bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> paml | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> radiant | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> sibsim4 | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> sigma-align | 5 | {bio-phylogeny,bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> sortmerna | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> staden | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> ampliconnoise | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> anfo | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> biomaj3-cli | 4 | {cloud} | </span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> brig | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext"> cluster3 | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> diamond-aligner | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> ea-utils | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> ecopcr | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> edtsurf | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> embassy-domalign | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> embassy-domsearch | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> fitgcp | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext"> freecontact | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> ghmm | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"> indelible | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> jellyfish1 | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> estscan | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> gasic | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> idba | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> jaligner | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> king-probe | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="plaintext"> mauve-aligner | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> mhap | 4 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> mlv-smile | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> mapsembler2 | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> neobio | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> openslide | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> orthanc-dicomweb | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> phyutility | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> prime-phylo | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> pymia | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> relion | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="plaintext"> s<span class="idiff left right">eqtools </span> | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> s<span class="idiff left right">ortmerna</span> | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> squizz | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> staden | 4 | {bio} | </span>
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78
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> transtermhp | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> treeview | 4 | {bio-phylogeny,bio} | </span>
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> zalign | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> abacas | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> ampliconnoise | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> assemblytics | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> bandage | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="plaintext"> beast2-mcmc | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> biomaj3-daemon | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> bio-tradis | 3 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> bppsuite | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> <span class="idiff left right">canu</span> | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> <span class="idiff left right">brig</span> | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> codonw | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext"> delly | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="plaintext"> elph | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="plaintext"> gatb-core | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> diamond-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> ea-utils | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> ecopcr | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> edtsurf | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> fitgcp | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext"> freecontact | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> harvest-tools | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"> ghmm | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> indelible | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> jellyfish1 | 3 | {bio} | </span>
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> libminc | 3 | {imaging-dev} | </span>
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114
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102
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> libsbml | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="plaintext"> <span class="idiff left right">lucy </span> | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext"> m<span class="idiff left right">icrobegps | 3 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> <span class="idiff left right">mauve-aligner</span> | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> m<span class="idiff left right">lv-smile | 3 | {cloud,bio}</span> | </span>
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105
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> mrs | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> murasaki | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="plaintext"> orthanc-mysql | 3 | {imaging} | </span>
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> paraclu | 3 | {cloud,bio} | </span>
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> parsnp | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="plaintext"> pbdagcon | 3 | {bio} | </span>
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> perm | 3 | {cloud,bio} | </span>
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> phast | 3 | {bio} | </span>
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110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> plasmidseeker | 3 | {bio} | </span>
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> predictprotein | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"> prime-phylo | 3 | {cloud,bio} | </span>
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> proalign | 3 | {bio-phylogeny,bio} | </span>
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128
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114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> probabel | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="plaintext"> pscan-chip | 3 | {bio} | </span>
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115
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> pscan-tfbs | 3 | {bio} | </span>
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116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> qrisk2 | 3 | {practice} | </span>
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="plaintext"> quorum | 3 | {bio} | </span>
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133
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117
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> rdp-alignment | 3 | {bio} | </span>
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134
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118
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> rdp-readseq | 3 | {bio} | </span>
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135
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119
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> saint | 3 | {bio} | </span>
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120
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> salmon | 3 | {bio} | </span>
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137
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121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> seer | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="plaintext"> segemehl | 3 | {bio} | </span>
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122
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> seqsero | 3 | {bio} | </span>
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123
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> seqtools | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> spread-phy | 3 | {bio-phylogeny,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -147,74 +130,86 @@ Last-Update: Mon, 02 Mar 2020 01:42:04 +0000</td>
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130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> andi | 2 | {bio} | </span>
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> baitfisher | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> bart-view | 2 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="plaintext"> beads | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="plaintext"> beast-mcmc | 2 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="plaintext"> bio-rainbow | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> beast2-mcmc | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> bitseq | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="plaintext"> <span class="idiff left right">blasr | 2 | {bio,bio-ngs}</span> | </span>
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> <span class="idiff left right">canu | 2 | {bio} </span> | </span>
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136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> centrifuge | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="plaintext"> clonalframeml | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> clonalorigin | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> cufflinks | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="plaintext"> daligner | 2 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="plaintext"> dascrubber | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="plaintext"> dindel | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="plaintext"> dwgsim | 2 | {bio} | </span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"> delly | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> elastix | 2 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="plaintext"> fastml | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> fsm-lite | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="plaintext"> hinge | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> igor | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="plaintext"> jmodeltest | 2 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="plaintext"> lamarc | 2 | {bio} | </span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> elph | 2 | {bio} | </span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> gatb-core | 2 | {bio} | </span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext"> harvest-tools | 2 | {bio} | </span>
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170
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144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> libgff | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext"> libncl | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="plaintext"> libpal-java | 2 | {bio-dev} | </span>
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173
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145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 2 | {bio-dev} | </span>
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174
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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175
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="plaintext"> maffilter | 2 | {bio} | </span>
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176
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="plaintext"> mptp | 2 | {bio} | </span>
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177
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="plaintext"> nanook | 2 | {bio} | </span>
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<td class="diff-line-num new old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"> lucy | 2 | {bio} | </span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> mhap | 2 | {bio,bio-ngs} | </span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> microbegps | 2 | {bio} | </span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> murasaki | 2 | {bio} | </span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"> orthanc-mysql | 2 | {imaging} | </span>
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178
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> orthanc-postgresql | 2 | {imaging} | </span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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179
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153
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> pilon | 2 | {bio} | </span>
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180
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154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> placnet | 2 | {bio} | </span>
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181
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<td class="diff-line-num new_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> poretools | 2 | {bio} | </span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext"> pscan-chip | 2 | {bio} | </span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"> quorum | 2 | {bio} | </span>
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182
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> rambo-k | 2 | {bio} | </span>
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183
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> rampler | 2 | {bio} | </span>
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184
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160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> rdp-classifier | 2 | {bio} | </span>
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185
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> relion | 2 | {bio} | </span>
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186
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="plaintext"> repeatmasker-recon | 2 | {bio} | </span>
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187
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> rtax | 2 | {cloud,bio} | </span>
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188
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> samblaster | 2 | {bio} | </span>
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189
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> scythe | 2 | {bio} | </span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext"> segemehl | 2 | {bio} | </span>
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190
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> seqtools | 2 | {bio} | </span>
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191
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167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> sickle | 2 | {bio} | </span>
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192
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> soapsnp | 2 | {bio} | </span>
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193
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="plaintext"> sprai | 2 | {bio} | </span>
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194
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> sumatra | 2 | {bio} | </span>
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195
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> sweed | 2 | {bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
196
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> trace2dbest | 2 | {bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
197
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172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> transrate-tools | 2 | {bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
198
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> vsearch | 2 | {bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
199
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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<td class="diff-line-num new old_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"> beads | 1 | {bio} | </span>
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<td class="diff-line-num new old_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"> beast-mcmc | 1 | {bio,bio-phylogeny} | </span>
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<td class="diff-line-num new old_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"> bio-rainbow | 1 | {bio} | </span>
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<td class="diff-line-num new old_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"> blasr | 1 | {bio,bio-ngs} | </span>
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<td class="diff-line-num old_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
200
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<td class="diff-line-num new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"> clonalframeml | 1 | {bio} | </span>
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201
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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<td class="diff-line-num new new_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> daligner | 1 | {bio-ngs,bio} | </span>
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<td class="diff-line-num new new_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext"> dascrubber | 1 | {bio} | </span>
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<td class="diff-line-num new new_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext"> dindel | 1 | {bio} | </span>
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<td class="diff-line-num new new_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext"> dwgsim | 1 | {bio} | </span>
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202
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> edflib | 1 | {imaging-dev} | </span>
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203
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> embassy-phylip | 1 | {bio,cloud} | </span>
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<td class="diff-line-num old_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
204
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> emmax | 1 | {bio} | </span>
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<td class="diff-line-num new old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"> fastml | 1 | {bio} | </span>
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205
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> freebayes | 1 | {bio} | </span>
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<td class="diff-line-num new old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext"> fsm-lite | 1 | {bio} | </span>
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192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext"> hinge | 1 | {bio} | </span>
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206
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193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> hunspell-en-med | 1 | {tools} | </span>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext"> igor | 1 | {bio} | </span>
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<td class="diff-line-num new old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> jmodeltest | 1 | {bio-phylogeny,bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
207
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> kma | 1 | {bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
208
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> kmerresistance | 1 | {bio} | </span>
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<td class="diff-line-num new old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext"> lamarc | 1 | {bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
209
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<td class="diff-line-num new_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> libctapimkt | 1 | {practice} | </span>
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<td class="diff-line-num old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
210
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200
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> libhmsbeagle | 1 | {bio-dev} | </span>
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211
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio-dev} | </span>
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<td class="diff-line-num new old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"> libncl | 1 | {bio} | </span>
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<td class="diff-line-num new old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext"> libpal-java | 1 | {bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
212
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<td class="diff-line-num new_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio} | </span>
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<td class="diff-line-num new old_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio-dev} | </span>
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext"> logol | 1 | {bio} | </span>
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207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"> maffilter | 1 | {bio} | </span>
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208
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> maxflow | 1 | {imaging-dev} | </span>
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209
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> medicalterms | 1 | {tools} | </span>
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216
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210
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> mencal | 1 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="plaintext"> metaphlan2 | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext"> mptp | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext"> nanook | 1 | {bio} | </span>
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213
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> pal2nal | 1 | {bio} | </span>
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214
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> patman | 1 | {bio} | </span>
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215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> phipack | 1 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -223,18 +218,21 @@ Last-Update: Mon, 02 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> prottest | 1 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> qcumber | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="plaintext"> repeatmasker-recon | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> roguenarok | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> runcircos-gui | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> samtools-legacy | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> scrm | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> seqan | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> seqmagick | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> seqtools | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> sga | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> skesa | 1 | {bio} | </span>
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232
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> snap-aligner | 1 | {bio} | </span>
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233
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> soapaligner | 1 | {bio} | </span>
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234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> spaced | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="plaintext"> sprai | 1 | {bio} | </span>
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236
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> srf | 1 | {bio-dev} | </span>
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239
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237
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> stacks | 1 | {bio} | </span>
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240
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238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> stringtie | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -284,6 +282,7 @@ Last-Update: Mon, 02 Mar 2020 01:42:04 +0000</td>
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284
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282
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="plaintext"> libseqlib | 0 | {bio-dev} | </span>
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285
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283
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="plaintext"> libstatgen | 0 | {bio-dev} | </span>
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284
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="plaintext"> libxdf | 0 | {imaging-dev} | </span>
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285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="plaintext"> metaphlan2 | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> metastudent-data | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext"> metastudent-data-2 | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="plaintext"> mia | 0 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -304,8 +303,8 @@ Last-Update: Mon, 02 Mar 2020 01:42:04 +0000</td>
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303
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="plaintext"> python-py2bit | 0 | {bio,bio-dev} | </span>
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305
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="plaintext"> python-pyani | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="plaintext"> python-tinyalign | 0 | {bio-dev,bio} | </span>
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC306" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC308" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC310" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="316" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -317,5 +316,5 @@ Last-Update: Mon, 02 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="plaintext"> trim-galore | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC318" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC320" class="line" lang="plaintext">(34<span class="idiff left right">5</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="plaintext">(34<span class="idiff left right">4</span> rows)</span>
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<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c0424c803e01a43ce31d5765ed5d298a08ffb3c9#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 02 Mar 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 02 Mar 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,6 +23,7 @@ Last-Update: Mon, 02 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> gdcm | 3.0.4 | 3.0.5 | Gert Wollny,Sébastien Jodogne,Steve M. Robbins | Gert Wollny | 2019-11-07 11:49:02+00</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> gnumed-server | 22.9 | 22.11 | Andreas Tille,Sebastian Hilbert | Andreas Tille | 2020-02-27 11:19:44+00</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> hdmf | 1.5.4 | 1.6.0 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> htsjdk | 2.18.2 | 2.21.2 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Andreas Tille | 2019-03-01 22:19:40+00</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> hyphy | 2.5.1 | 2.5.4 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -47,7 +48,6 @@ Last-Update: Mon, 02 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> mothur | 1.42.1 | 1.43.0 | Andreas Tille,Steffen Moeller,Tomasz Buchert | Andreas Tille | 2019-08-01 19:09:05+00</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00</span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> ncbi-entrez-direct | 12.0.20190816 | 13.5.20200221 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> ngs-sdk | 2.10.2 | 2.10.4 | Andreas Tille,Olivier Sallou,Vincent Danjean | Michael R. Crusoe | 2020-02-17 15:36:45+00</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> nibabel | 2.5.1 | 3.0.1 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-20 10:35:09+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -67,7 +67,13 @@ Last-Update: Mon, 02 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> python-treetime | 0.7.1 | 0.7.4 | Andreas Tille | Steffen Moeller | 2020-01-18 20:52:48+00</span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> q2cli | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-16 10:20:08+00</span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> q2-feature-classifier | 2019.4.0 | 2019.10.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-11 10:00:33+00</span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00</span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00</span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> q2-feature-classifier | 2019.4.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-11 10:00:33+00</span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> q2-feature-table | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:49:21+00</span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> q2-metadata | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Andreas Tille | 2020-02-03 08:42:28+00</span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> q2-quality-filter | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:49+00</span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00</span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> q2-types | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-23 20:39:42+00</span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00</span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -84,7 +90,7 @@ Last-Update: Mon, 02 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00</span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00</span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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88
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94
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"></span>
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89
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95
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"></span>
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90
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96
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> source | id | severity | title </span>
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