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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4dd4ebed23e5ad5b872139d1a311b91d87535ea6">4dd4ebed</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-03T13:44:25+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4dd4ebed23e5ad5b872139d1a311b91d87535ea6#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 03 Mar 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 03 Mar 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 172 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 95 | {practice,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 46 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 175 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 96 | {practice,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 44 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 38 | {oncology,laboratory,imaging,his,practice} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dcm2niix | 37 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> orthanc-wsi | 37 | {oncology,imaging,his,laboratory,practice} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> amide | 33 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> amide | 34 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope | 27 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> medicalterms | 26 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> htsjdk | 23 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gdcm | 17 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> gnumed-server | 17 | {practice} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> ngs-sdk | 13 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> gnumed-server | 16 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> adun.app | 12 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> minc-tools | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> ngs-sdk | 12 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> minc-tools | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> king | 10 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> insighttoolkit4 | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> jebl2 | 9 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,44 +30,44 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> obitools | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> psychopy | 8 | {psychology} | </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> biosig4c++ | 7 | {imaging,physics} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> librg-utils-perl | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> ncbi-entrez-direct | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> arden | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> cgview | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> fastlink | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> cluster3 | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> fastlink | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> maqview | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> melting | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> mipe | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> ngs-sdk | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> openslide | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> orthanc-webviewer | 6 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> cluster3 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> dazzdb | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> dicompyler | 5 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> embassy-domainatrix | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> ncbi-seg | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> norsp | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> <span class="idiff left right">paml | 5 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> <span class="idiff left right">openslide | 5 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> radiant | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> sibsim4 | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> sigma-align | 5 | {bio-phylogeny,bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> anfo | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> anfo | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> biomaj3-cli | 4 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> embassy-domalign | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> embassy-domsearch | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> estscan | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> gasic | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> gasic | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> idba | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> jaligner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> king-probe | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> mapsembler2 | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> neobio | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext"> openslide | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> mapsembler2 | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> neobio | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> orthanc-dicomweb | 4 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> paml | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> phyutility | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> pymia | 4 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -78,9 +78,9 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> transtermhp | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> treeview | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> zalign | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext"> zalign | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> abacas | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> ampliconnoise | 3 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> ampliconnoise | 3 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> assemblytics | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> bandage | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> biomaj3-daemon | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -88,11 +88,10 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> bppsuite | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> brig | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> codonw | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> diamond-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> ea-utils | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> ecopcr | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> edtsurf | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext"> fitgcp | 3 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> fitgcp | 3 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> freecontact | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> ghmm | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -103,6 +102,7 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> mauve-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> mlv-smile | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> mrs | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"> nutsqlite | 3 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> paraclu | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> parsnp | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> perm | 3 | {cloud,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -131,20 +131,23 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> baitfisher | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> bart-view | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> beast2-mcmc | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> biosig4c++ | 2 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> bitseq | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> canu | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> centrifuge | 2 | {bio} | </span>
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> clonalorigin | 2 | {bio} | </span>
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> cufflinks | 2 | {bio,cloud} | </span>
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139
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> delly | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> diamond-aligner | 2 | {bio} | </span>
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> elastix | 2 | {imaging} | </span>
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141
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> elph | 2 | {bio} | </span>
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144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> gatb-core | 2 | {bio} | </span>
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145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> harvest-tools | 2 | {bio} | </span>
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> libgff | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> libncl | 2 | {bio} | </span>
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 2 | {bio-dev} | </span>
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146
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> lucy | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="plaintext"> mhap | 2 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"> mhap | 2 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> microbegps | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> murasaki | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> orthanc-mysql | 2 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -152,8 +155,8 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> pilon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> placnet | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="plaintext"> poretools | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> pscan-chip | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"> qcumber | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> quorum | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> rambo-k | 2 | {bio} | </span>
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> rampler | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -173,9 +176,10 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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173
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> vsearch | 2 | {bio} | </span>
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174
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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175
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> beads | 1 | {bio} | </span>
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176
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="plaintext"> beast-mcmc | 1 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"> beast-mcmc | 1 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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177
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> bio-rainbow | 1 | {bio} | </span>
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178
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="plaintext"> blasr | 1 | {bio,bio-ngs} | </span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> blasr | 1 | {bio-ngs,bio} | </span>
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179
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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180
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> clonalframeml | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -184,8 +188,9 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> dindel | 1 | {bio} | </span>
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185
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189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> dwgsim | 1 | {bio} | </span>
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> edflib | 1 | {imaging-dev} | </span>
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187
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="plaintext"> embassy-phylip | 1 | {<span class="idiff left right">bio,cloud</span>} | </span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext"> embassy-phylip | 1 | {<span class="idiff left right">cloud,bio</span>} | </span>
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188
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192
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> emmax | 1 | {bio} | </span>
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193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext"> fasta3 | 1 | {bio} | </span>
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189
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194
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> fastml | 1 | {bio} | </span>
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190
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195
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> freebayes | 1 | {bio} | </span>
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191
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> fsm-lite | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -198,10 +203,9 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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198
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> lamarc | 1 | {bio} | </span>
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199
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204
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> libctapimkt | 1 | {practice} | </span>
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200
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> libhmsbeagle | 1 | {bio-dev} | </span>
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201
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="plaintext"> libncl | 1 | {bio} | </span>
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202
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206
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> libpal-java | 1 | {bio-dev} | </span>
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203
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio} | </span>
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204
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207
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio-dev} | </span>
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208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio} | </span>
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205
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209
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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206
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210
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> logol | 1 | {bio} | </span>
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207
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> maffilter | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -215,8 +219,8 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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215
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219
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> phipack | 1 | {bio} | </span>
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216
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220
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> phybin | 1 | {bio} | </span>
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217
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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222
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"> poretools | 1 | {bio} | </span>
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223
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> prottest | 1 | {bio-phylogeny,bio} | </span>
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219
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="plaintext"> qcumber | 1 | {bio} | </span>
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220
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> repeatmasker-recon | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> roguenarok | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -241,16 +245,16 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> surankco | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> thesias | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> tnseq-transit | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC244" class="line" lang="plaintext"> tree-puzzle | 1 | {<span class="idiff left right">bio,cloud,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="plaintext"> tree-puzzle | 1 | {<span class="idiff left right">cloud,bio-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> varscan | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> biobambam2 | 0 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="plaintext"> biosig4c++ | 0 | {physics} | </span>
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> emboss-explorer | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC253" class="line" lang="plaintext"> fasta3 | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="plaintext"> freecontact | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="plaintext"> gatb-core | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -295,11 +299,11 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="plaintext"> opensurgsim | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="plaintext"> oscar | 0 | {<span class="idiff left right">data,practice,tools</span>} | </span>
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="plaintext"> oscar | 0 | {<span class="idiff left right">tools,data,practice</span>} | </span>
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="plaintext"> papyrus | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="plaintext"> python-deeptools | 0 | {bio<span class="idiff left right">,bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="plaintext"> python-deeptools | 0 | {bio<span class="idiff left right">-dev,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC307" class="line" lang="plaintext"> python-py2bit | 0 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC308" class="line" lang="plaintext"> python-pyani | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="plaintext"> python-tinyalign | 0 | {bio-dev,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -316,5 +320,5 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC320" class="line" lang="plaintext"> trim-galore | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC321" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC322" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC319" class="line" lang="plaintext">(34<span class="idiff left right">4</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="plaintext">(34<span class="idiff left right">8</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC324" class="line" lang="plaintext"></span></pre>
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<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4dd4ebed23e5ad5b872139d1a311b91d87535ea6#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 03 Mar 2020 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 03 Mar 2020 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,7 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> beast2-mcmc | 2.6.0 | 2.6.<span class="idiff left right">1</span> | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> beast2-mcmc | 2.6.0 | 2.6.<span class="idiff left right">2</span> | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> biobambam2 | 2.0.153 | 2.0.156+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> biojava-live | 1.7.1 | 1.9.3 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2018-11-12 15:49:23+00</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -40,7 +40,7 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> libics | 1.6.3 | 1.6.4 | Andreas Tille | Andreas Tille | 2019-08-01 12:39:13+00</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200<span class="idiff left right">227.17134f9</span> | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200<span class="idiff left right">302.2594964</span> | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> libmaus2 | 2.0.698 | 2.0.704 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-02-05 10:04:12+00</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -58,6 +58,7 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> picard-tools | 2.18.25 | 2.22.0 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> plink2 | 2.00~a3-200217 | 200225 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> prokka | 1.14.5 | 1.14.6 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-04 11:00:31+00</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> psychopy | 2020.1.1 | 2020.1.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-02-24 08:55:42+00</span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00</span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> python-bids-validator | 1.2.4 | 1.4.2 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -91,7 +92,7 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00</span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00</span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="plaintext">(<span class="idiff left right">89</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext">(<span class="idiff left right">90</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> source | id | severity | title </span>
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