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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/trinityrnaseq">Debian Med / trinityrnaseq</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/2831268b90d9ea99c0ed222ded5b2e543086b78d">2831268b</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2019-10-14T10:49:01+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.8.6+dfsg</pre>
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<h4>22 changed files:</h4>
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.gitignore
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.travis.yml
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<a href="#033cacac43f13c0f6a94f8284562d7e75d43154b">
Analysis/DifferentialExpression/GOplot.Rscript
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<a href="#c8f064a997862c81dcee2544e28c7e36e11ba0a6">
Analysis/DifferentialExpression/PtR
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Analysis/DifferentialExpression/add_annotations_to_GO_and_lengths_file.R
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<a href="#5ec0a90efda63828a7fd63828346f642c3f159ea">
Analysis/DifferentialExpression/analyze_diff_expr.pl
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<a href="#b4116e7d7f4d2dc5000188baf0755a7b615cb799">
Analysis/DifferentialExpression/prep_n_run_GOplot.pl
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<a href="#514f512292c05a5ef3bd2c81bc2976e7c705842e">
Analysis/DifferentialExpression/run_DE_analysis.pl
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<a href="#9d7d66f338f0fe86ecd2ae542ce0703b0e1e5aaa">
Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
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<a href="#0c138990846c52c002f77f524cf63e8385cad532">
Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
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Analysis/SuperTranscripts/pylib/Compact_graph_pruner.py
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Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
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Analysis/SuperTranscripts/pylib/Node_alignment.py
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Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
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<a href="#3baa3cda7567ab3cb0feca6958db153827c68c24">
Analysis/SuperTranscripts/pylib/TGraph.py
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<a href="#4f13cbc6e528e468e4c4e2b1852bcaadad2b76d8">
Analysis/SuperTranscripts/pylib/TNode.py
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<a href="#0e3a6b7913578d52b50329e6de6dffd7f5793de2">
Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py
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<a href="#e3333e621f6babf71dc844d0646fce4ab19be49f">
Butterfly/src/src/Path.java
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<a href="#d743efa701c242b34391688ec2e3956cbb09c7ef">
Butterfly/src/src/TransAssembly_allProbPaths.java
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<a href="#36238d5fa26683466193f61b8d724919bec12681">
Changelog.txt
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Chrysalis/CMakeLists.txt
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Chrysalis/GraphFromFasta_MPI.cc
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<h5>The diff was not included because it is too large.</h5>
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