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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7fd3f8b2f2f7beefb8efb945920f1d1c0d7738be">7fd3f8b2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-04T01:45:09+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7fd3f8b2f2f7beefb8efb945920f1d1c0d7738be#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Tue, 03 Mar 2020 13</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Wed, 04 Mar 2020 01</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------</span>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7fd3f8b2f2f7beefb8efb945920f1d1c0d7738be#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Tue, 03 Mar 2020 13:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Wed, 04 Mar 2020 01:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,7 +24,6 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000</td>
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<td class="diff-line-num old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00</span>
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<td class="diff-line-num old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> gdcm | 3.0.4 | 3.0.5 | Gert Wollny,Sébastien Jodogne,Steve M. Robbins | Gert Wollny | 2019-11-07 11:49:02+00</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> gnumed-server | 22.9 | 22.11 | Andreas Tille,Sebastian Hilbert | Andreas Tille | 2020-02-27 11:19:44+00</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> hdmf | 1.5.4 | 1.6.0 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> htsjdk | 2.18.2 | 2.21.2 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Andreas Tille | 2019-03-01 22:19:40+00</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> hyphy | 2.5.1 | 2.5.4 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,7 +50,6 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> ngs-sdk | 2.10.2 | 2.10.4 | Andreas Tille,Olivier Sallou,Vincent Danjean | Michael R. Crusoe | 2020-02-17 15:36:45+00</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> nibabel | 2.5.1 | 3.0.1 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-20 10:35:09+00</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00</span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -92,7 +90,7 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00</span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00</span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext">(<span class="idiff left right">90</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext">(<span class="idiff left right">88</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> source | id | severity | title </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -162,8 +160,6 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> gemma | 952190 | serious | gemma: FTBFS: dh_auto_test: error: make -j1 check returned exit code 2</span>
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> gentle | 732691 | normal | Pressing "alignment or Ctrl+G" only results in a dialog with a cancel button</span>
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> ghmm | 936609 | normal | ghmm: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> gnumed-client | 936630 | serious | gnumed-client: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="plaintext"> gnumed-client | 952633 | wishlist | gnumed-client: hints for py3 packaging</span>
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> harvest-tools | 943055 | normal | harvest-tools: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> hinge | 952615 | serious | hinge: FTBFS: fmt.h:22:10: fatal error: spdlog/fmt/bundled/core.h: No such file or directory</span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> htsjdk | 877590 | normal | FTBFS: error: package org.testng does not exist</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -185,7 +181,6 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> kineticstools | 936797 | serious | kineticstools: Python2 removal in sid/bullseye</span>
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<td class="diff-line-num old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> kissplice | 936798 | normal | kissplice: Python2 removal in sid/bullseye</span>
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> kmer | 936802 | normal | kmer: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="plaintext"> libbio-alignio-stockholm-perl | 952747 | serious | libbio-alignio-stockholm-perl: missing Breaks+Replaces: libbio-perl-perl (<< 1.7.3)</span>
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> libgtextutils | 925745 | serious | libgtextutils: ftbfs with GCC-9</span>
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> libhmsbeagle | 950367 | normal | confuses DEB_HOST_MULTIARCH and DEB_HOST_GNU_TYPE</span>
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191
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> libjung-free-java | 884379 | minor | libjung-free-java: New version available</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -257,7 +252,7 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000</td>
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252
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> q2-types | 950932 | normal | q2-types: FTBFS with pandas 1.0: test failures</span>
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253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> qcumber | 883260 | wishlist | qcumber: [INLT:ru] Russian translation of debconf template</span>
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254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> qcumber | 913936 | wishlist | qcumber: [INTL:pt_BR] Brazilian Portuguese debconf templates translation</span>
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260
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="plaintext"> qiime | 950842 | <span class="idiff left right">important</span> | autopkg tests fail with Python 3.8</span>
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="plaintext"> qiime | 950842 | <span class="idiff left right">serious </span> | autopkg tests fail with Python 3.8</span>
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256
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="plaintext"> qrisk2 | 912118 | normal | qrisk2: 2017 upstream release</span>
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> qrisk2 | 912119 | normal | qrisk2: please provide qrisk3</span>
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> rapmap | 909766 | important | Use Debian packaged spdlog instead of code copy of old version</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -265,8 +260,6 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000</td>
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260
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="plaintext"> salmon | 952102 | serious | salmon: FTBFS: SalmonAlevin.cpp:780:6: error: ‘class rapmap::utils::MappingConfig’ has no member named ‘maxSlack’</span>
</pre>
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="plaintext"> sambamba | 938431 | normal | sambamba: Python2 removal in sid/bullseye</span>
</pre>
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="plaintext"> sambamba | 948919 | serious | sambamba FTBFS: undefined reference to 'cram_to_bam'</span>
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="plaintext"> seqan | 943260 | normal | seqan: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="plaintext"> seqan | 952203 | serious | seqan: FTBFS: dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 returned exit code 2</span>
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263
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> seqan2 | 892222 | normal | seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta</span>
</pre>
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="plaintext"> seqan2 | 917851 | important | seqan2 2.4.0+dfsg-9: FTBFS, alignment problem</span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"> simpleitk | 949355 | serious | simpleitk FTBFS: test failures</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -292,5 +285,5 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="plaintext"> xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation</span>
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"</span>
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext"> xmedcon | 924017 | normal | desktop entry</span>
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="plaintext">(19<span class="idiff left right">5</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext">(19<span class="idiff left right">0</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC289" class="line" lang="plaintext"></span></pre>
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