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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-vdb">Debian Med / ncbi-vdb</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/f3f816ec72adf7e144989791607b93158eb11854">f3f816ec</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-03-04T21:03:52+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">There is another really tricky way to reference private mbedtls code copy which is fixed here
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<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/754a045224fb00738ac3d6ecc7a1c7c9732e9686">754a0452</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-03-04T21:04:06+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fail in case some vdb_ prefixed code copy names exist in resulting code
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<h4>4 changed files:</h4>
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<a href="#e1101c08fba4d79dc848002753ce649c27c108e8">
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+
debian/patches/redefine_CALL_MBEDTLS.patch
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<li class="file-stats">
<a href="#70e6d751e10b485a52d52359f91c230847705837">
debian/patches/remove_remaining_vdb_mbedtls_invocations.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="e1101c08fba4d79dc848002753ce649c27c108e8">
<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/97fcb6f3dedf73de2bf91d17be44b20b5fcd43f5...754a045224fb00738ac3d6ecc7a1c7c9732e9686#e1101c08fba4d79dc848002753ce649c27c108e8"><strong>debian/patches/redefine_CALL_MBEDTLS.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-03-04 20:15:10 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: There is another really tricky way to reference private mbedtls code copy which is fixed here</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/libs/krypto/rsa-aes-hmac.c</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/libs/krypto/rsa-aes-hmac.c</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -137,7 +137,7 @@</span> rc_t handle_mbedtls_return ( const char</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> #define CALL_MBEDTLS( func_name, params ) \</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- handle_mbedtls_return ( # func_name, vdb_ ## func_name params )</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ handle_mbedtls_return ( # func_name, func_name params )</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> typedef struct EncryptStuff EncryptStuff;</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> struct EncryptStuff</span></pre>
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<li id="70e6d751e10b485a52d52359f91c230847705837">
<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/97fcb6f3dedf73de2bf91d17be44b20b5fcd43f5...754a045224fb00738ac3d6ecc7a1c7c9732e9686#70e6d751e10b485a52d52359f91c230847705837"><strong>debian/patches/remove_remaining_vdb_mbedtls_invocations.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Steffen Moeller</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-03-02 01:15:10 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Avoid further invocation of private code copy of mbedtls</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">Index: ncbi-vdb/libs/cloud/aws-auth.c</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-vdb.orig/libs/cloud/aws-auth.c</span></span>
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<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/97fcb6f3dedf73de2bf91d17be44b20b5fcd43f5...754a045224fb00738ac3d6ecc7a1c7c9732e9686#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,3 +13,4 @@ i386-uint64_msbit.patch</td>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"># fix_linking.patch</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">fix_path_mbedtls.patch</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">remove_remaining_vdb_mbedtls_invocations.patch</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">redefine_CALL_MBEDTLS.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/97fcb6f3dedf73de2bf91d17be44b20b5fcd43f5...754a045224fb00738ac3d6ecc7a1c7c9732e9686#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -47,6 +47,13 @@ override_dh_auto_configure:</td>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> dh_auto_build --no-parallel</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> # we need to make really sure that no 'vdb_'-prefixed functions will remain ...</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> if find . \( -name "*.so" -o -name "*.a" \) -exec strings \{\} \; | tee | grep -q vdb_mbedtls ; then \</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> find . \( -name "*.so" -o -name "*.a" \) -exec strings \{\} \; | tee | grep vdb_mbedtls ; \</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> grep -Rl vdb_mbedtls debian/tmp/* ; \</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> exit 1 ; \</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> false ; \</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> fi</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext">ifeq (,$(findstring nocheck,$(DEB_BUILD_OPTIONS)))</span>
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