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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c598411b845f24884acdfa1aea7e86d775bc716a">c598411b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-10T13:44:18+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c598411b845f24884acdfa1aea7e86d775bc716a#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 10 Mar 2020 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 10 Mar 2020 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">81</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">79</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 101 | {practice,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> gdcm | 48 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> dcm2niix | 41 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> orthanc-wsi | 38 | {oncology,laboratory,imaging,his,practice} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> amide | 36 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicom3tools | 31 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicomscope | 31 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> <span class="idiff left right">dicom3tools | 30 | {imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right">htsjdk | 27 | {bio-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> medicalterms | 27 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> <span class="idiff left right">htsjdk | 26 | {bio-dev</span>} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> <span class="idiff left right">gdcm | 20</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> <span class="idiff left right">gdcm | 21 | {imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> <span class="idiff left right">pixelmed | 18</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> gnumed-server | 17 | {practice} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> pixelmed | 17 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> king | 15 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> invesalius | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> minc-tools | 14 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> king | 16 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> invesalius | 15 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> minc-tools | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> ngs-sdk | 14 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> adun.app | 13 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> insighttoolkit4 | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> openslide | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> vtk-dicom | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> insighttoolkit4 | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> openslide | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> vtk-dicom | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> jebl2 | 11 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> mia | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> biosig4c++ | 10 | {imaging,physics} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> jebl2 | 10 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> mia | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> plastimatch | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> tree-puzzle | 10 | {bio,bio-phylogeny,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> biojava-live | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> gdcm | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> librg-utils-perl | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> plastimatch | 9 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> tree-puzzle | 9 | {bio,bio-phylogeny,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> biojava-live | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> ncbi-entrez-direct | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> fastlink | 8 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> ncbi-entrez-direct | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> ncbi-seg | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> norsp | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> psychopy | 8 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> sortmerna | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> staden | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> arden | 7 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,23 +45,27 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> maqview | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> mipe | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> ncbi-seg | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> norsp | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> neobio | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> obitools | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> psychopy | 7 | {psychology} | </span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> radiant | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> sigma-align | 7 | {bio-phylogeny,bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> ampliconnoise | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> beast2-mcmc | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> jaligner | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> <span class="idiff left right">neobio | 6 | {cloud,bio}</span> | </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> <span class="idiff left right">libsbml | 6 | {bio-dev} </span> | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> phyutility | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> piler | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> radiant | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> sigma-align | 6 | {bio-phylogeny,bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> ampliconnoise | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> rdp-readseq | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> sibsim4 | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> treeview | 6 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> zalign | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> anfo | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> biomaj3-cli | 5 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> bio-tradis | 5 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> dazzdb | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> ea-utils | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> edtsurf | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> embassy-domainatrix | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> embassy-domalign | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> embassy-domsearch | 5 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -68,28 +75,26 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> idba | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> king-probe | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> l<span class="idiff left right">ibsbml | 5 | {bio-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> l<span class="idiff left right">ucy | 5 | {bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> mauve-aligner | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> openslide | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> orthanc-webviewer | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> paml | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> paraclu | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> perm | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> predictprotein | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> prime-phylo | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> probabel | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> saint | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> salmon | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> sibsim4 | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> squizz | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> treeview | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> zalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> alter-sequence-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> beast2-mcmc | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> bppsuite | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> brig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> cluster3 | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> codonw | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> diamond-aligner | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="plaintext"> edtsurf | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> elph | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> fitgcp | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> harvest-tools | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -99,28 +104,29 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> libgff | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> libncl | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="plaintext"> lucy | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> mapsembler2 | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> mlv-smile | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> murasaki | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> <span class="idiff left right">paraclu | 4 | {cloud,bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> <span class="idiff left right">openslide | 4 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> parsnp | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> phast | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> placnet | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> plasmidseeker | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="plaintext"> p<span class="idiff left right">rime-phylo | 4 | {cloud,bio}</span> | </span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"> p<span class="idiff left right">oretools | 4 | {bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> proalign | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> pscan-chip | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> pscan-tfbs | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"> rdp-readseq | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> relion | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext"> s<span class="idiff left right">aint </span> | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext"> s<span class="idiff left right">cythe</span> | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> seer | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> seqsero | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> sickle | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> spread-phy | 4 | {bio-phylogeny,bio} | </span>
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126
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> transtermhp | 4 | {bio} | </span>
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128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> velvetoptimiser | 4 | {bio} | </span>
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> vsearch | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> alter-sequence-alignment | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> baitfisher | 3 | {bio} | </span>
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> bandage | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> beast-mcmc | 3 | {bio-phylogeny,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -132,33 +138,31 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000</td>
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> daligner | 3 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> dascrubber | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> delly | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> elastix | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> gatb-core | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> ghmm | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> lamarc | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> libminc | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> libpal-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> logol | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> maffilter | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> mhap | 3 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="plaintext"> mlv-smile | 3 | {cloud,bio} | </span>
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> mptp | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> orthanc-dicomweb | 3 | {imaging} | </span>
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154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> pbdagcon | 3 | {bio} | </span>
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> phipack | 3 | {bio} | </span>
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156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> pilon | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="plaintext"> poretools | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="plaintext"> pscan-chip | 3 | {bio} | </span>
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> quorum | 3 | {bio} | </span>
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> rampler | 3 | {bio} | </span>
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> rdp-alignment | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext"> rdp-classifier | 3 | {bio} | </span>
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> repeatmasker-recon | 3 | {bio} | </span>
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> samblaster | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="plaintext"> scythe | 3 | {bio} | </span>
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> segemehl | 3 | {bio} | </span>
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> seqtools | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="plaintext"> sickle | 3 | {bio} | </span>
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> sprai | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="plaintext"> spread-phy | 3 | {bio-phylogeny,bio} | </span>
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162
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> sweed | 3 | {bio} | </span>
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163
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167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> transrate-tools | 3 | {bio} | </span>
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> tvc | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -176,24 +180,21 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000</td>
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176
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> cufflinks | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> dindel | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> dwgsim | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="plaintext"> elastix | 2 | {imaging} | </span>
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> fastml | 2 | {bio} | </span>
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> freebayes | 2 | {bio} | </span>
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> fsm-lite | 2 | {bio} | </span>
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> hinge | 2 | {bio} | </span>
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> igor | 2 | {bio} | </span>
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> jmodeltest | 2 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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188
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189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> mrs | 2 | {bio} | </span>
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> nanook | 2 | {bio} | </span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext"> opencfu | 2 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> patman | 2 | {bio} | </span>
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193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> phybin | 2 | {bio} | </span>
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194
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> prottest | 2 | {bio-phylogeny,bio} | </span>
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195
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> qcumber | 2 | {bio} | </span>
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> qrisk2 | 2 | {practice} | </span>
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> rambo-k | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="plaintext"> rdp-classifier | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> relion | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> roguenarok | 2 | {bio} | </span>
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200
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> rtax | 2 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -203,8 +204,10 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> soapaligner | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> soapsnp | 2 | {bio} | </span>
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206
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> srf | 2 | {bio-dev} | </span>
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207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"> stacks | 2 | {bio} | </span>
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208
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> sumatra | 2 | {bio} | </span>
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207
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209
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> trace2dbest | 2 | {bio} | </span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> tree-puzzle | 2 | {cloud,bio-phylogeny,bio} | </span>
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208
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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209
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212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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210
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213
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> edflib | 1 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -217,15 +220,14 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000</td>
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220
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> libbio-mage-utils-perl | 1 | {bio-dev} | </span>
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218
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221
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> libctapimkt | 1 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> libhmsbeagle | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> maxflow | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> medicalterms | 1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> mencal | 1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> metaphlan2 | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> nutsqlite | 1 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="plaintext"> opencfu | 1 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> orthanc-mysql | 1 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> orthanc-postgresql | 1 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> pal2nal | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -238,13 +240,11 @@ Last-Update: Tue, 10 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> skesa | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> spaced | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="plaintext"> stacks | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> stringtie | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> suitename | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> sumaclust | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> surankco | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> thesias | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC247" class="line" lang="plaintext"> tree-puzzle | 1 | {cloud,bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> varscan | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> vtk-dicom | 1 | {imaging-dev} | </span>
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<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c598411b845f24884acdfa1aea7e86d775bc716a#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 10 Mar 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 10 Mar 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -49,14 +49,13 @@ Last-Update: Tue, 10 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> nanopolish | 0.11.3 | 0.12.0 | Andreas Tille | Steffen Moeller | 2019-12-22 12:49:21+00</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00</span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> ncbi-entrez-direct | 12.0.20190816 | 13.5.20200304 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> ngs-sdk | 2.10.2 | 2.10.4 | Andreas Tille,Olivier Sallou,Vincent Danjean | Michael R. Crusoe | 2020-02-17 15:36:45+00</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00</span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> picard-tools | 2.18.25 | 2.22.0 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00</span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> plink2 | 2.00~a3-200217 | 200<span class="idiff left right">225</span> | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> plink2 | 2.00~a3-200217 | 200<span class="idiff left right">308</span> | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> prokka | 1.14.5 | 1.14.6 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-04 11:00:31+00</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> psychopy | 2020.1.1 | 2020.2.3 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-02-24 08:55:42+00</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -94,7 +93,7 @@ Last-Update: Tue, 10 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00</span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00</span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext">(9<span class="idiff left right">2</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext">(9<span class="idiff left right">1</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> source | id | severity | title </span>
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