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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/scrm">Debian Med / scrm</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/5e510afefcf988e816374b634771973b8ec08feb">5e510afe</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:01:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set to UNRELEASED before running routine-update
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/ff3505a4eb88422b8b7ce2c68d7bdb104c63f9cb">ff3505a4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:01:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/f4585196d3ef24c69888852329fc32ed2d158d37">f4585196</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:01:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Trim trailing whitespace.
Fixes: lintian: file-contains-trailing-whitespace
See-also: https://lintian.debian.org/tags/file-contains-trailing-whitespace.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/9b6c7761de78dfbc37b2816229e7bfcbc3d2edb3">9b6c7761</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:01:32+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit.</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/bca8fe4020b79159cca2d03b7ad7178acc5e3881">bca8fe40</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:01:33+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright).</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/cc548284c3c74e876b25d3dfc71dade84a5c339e">cc548284</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:03:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.7.4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/3fa19f03fdab040902044a6c1f00dff60897e254">3fa19f03</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:03:42+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.7.4'
Update to upstream version '1.7.4'
with Debian dir 3f05a7c7b03da4249f518ce03d1dcc03f8254f02</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/586d0cb3c69ad0ddfbe3ee2568c78029d869da77">586d0cb3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:08:24+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Really create an examples package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/40f15305362a8d7e1c783b03ae17abeb8f125a3e">40f15305</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:11:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">run-unit-tests makes possibly more sense in /usr/share/doc/scrm
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/b2278fb93510ab54182cdd07fc0d09b2bce6646a">b2278fb9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:21:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Proper installation of multi-binary package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/dec6b7ecf309b638a98d6cc544db7776d4e5b03e">dec6b7ec</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:26:15+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cleanup test dir from build time test results
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/f1755081b6d0ddb25f6320cfc41356a5e2fa0f33">f1755081</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:31:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">do not compress run-unit-test
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/scrm/-/commit/3bc8ed56a2b78bc9db8a92b470c88f7a1382d6de">3bc8ed56</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-12T22:33:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add some debug code
</pre>
</li>
</ul>
<h4>10 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#e45e87172eb4f66ec4e9ee467fcb28d14e91fdaf">
<span class="deleted-file">
−
debian/scrm-examples.docs
</span>
</a>
</li>
<li class="file-stats">
<a href="#2e46eb1a1c9e97a63ee8338a48cb3c6f7eeb8c9d">
debian/scrm-examples.install
</a>
</li>
<li class="file-stats">
<a href="#7d43e7ab820a4697667f82373a9b4c4c87f9e0b5">
debian/docs
→
debian/scrm.docs
</a>
</li>
<li class="file-stats">
<a href="#f0d63cdb80958b15f48386f7972ca34625bb3a80">
<span class="new-file">
+
debian/scrm.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#11712ea715dc3a858ce3b97a01624dfd61fcf2c6">
<span class="new-file">
+
debian/scrm.manpages
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/scrm/-/compare/63390d493b31fb25324a89a08f1793326c5cb637...3bc8ed56a2b78bc9db8a92b470c88f7a1382d6de#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num old old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">scrm (1.7.4-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">scrm (1.7.4-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2
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<td class="diff-line-num new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
</pre>
</td>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,12 +9,19 @@ scrm (1.7.4-1) unstable; urgency=medium</td>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> [ Samyak Jain ]</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Switch d/watch version to 4</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * New upstream version 1.7.4</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<td class="diff-line-num new_line old" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> * Bumps standard version and remove d/compat (use debhelper-compa<span class="idiff left right">a</span>t instead)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Bumps standard version and remove d/compat (use debhelper-compat instead)</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Adds autopkgtest</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Document how users can test their local installation</span>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> * Add debian/salsa-ci.yml</span>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> * Properly install tests data in examples package</span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> * Trim trailing whitespace.</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Database, Bug-Submit.</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> * Remove obsolete field Name from debian/upstream/metadata (already</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> present in machine-readable debian/copyright).</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> -- Samyak Jain <samyak.jn11@gmail.com> Fri, 13 Mar 2020 02:02:53 +0530</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">scrm (1.7.3-1) unstable; urgency=medium</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/scrm/-/compare/63390d493b31fb25324a89a08f1793326c5cb637...3bc8ed56a2b78bc9db8a92b470c88f7a1382d6de#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,6 +9,7 @@ Standards-Version: 4.5.0</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/scrm</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/scrm.git</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Homepage: https://github.com/scrm/scrm</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Package: scrm</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Architecture: any</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,3 +24,19 @@ Description: simulator of evolution of genetic sequences</td>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> efficient. Compared to other coalescent simulators, it can simulate</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> chromosome-scale sequences without a measureable reduction of genetic linkage</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> between different sites.</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">Package: scrm-examples</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">Description: simulator of evolution of genetic sequences (example data)</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> scrm simulates the evolution of genetic sequences.</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> It takes a neutral evolutionary model as input, and generates random sequences</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> that evolved under the model. As coalescent simulator, it traces the ancestry</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> of the sampled sequences backwards in time and is therefore extremely</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> efficient. Compared to other coalescent simulators, it can simulate</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> chromosome-scale sequences without a measureable reduction of genetic linkage</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> between different sites.</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> This package contains example data which are used in the package test suite.</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/scrm/-/compare/63390d493b31fb25324a89a08f1793326c5cb637...3bc8ed56a2b78bc9db8a92b470c88f7a1382d6de#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,13 @@ include /usr/share/dpkg/default.mk</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS = hardening=+all</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"># main packaging script based on dh7 syntax</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> find tests \( -name "*.o" -o -name .dirstamp \) -delete</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> find tests -name .deps -type d | xargs rm -rf</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> dh_install</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">override_dh_compress:</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> dh_compress --exclude=run-unit-test</span></pre>
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<a href="https://salsa.debian.org/med-team/scrm/-/compare/63390d493b31fb25324a89a08f1793326c5cb637...3bc8ed56a2b78bc9db8a92b470c88f7a1382d6de#e45e87172eb4f66ec4e9ee467fcb28d14e91fdaf"><strong>debian/scrm-examples.docs</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">debian/tests/run-unit-test</span></pre>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nx">tests</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scrm</span><span class="o" style="font-weight: 600;">/</span><span class="nx">examples</span></span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">tests</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scrm</span><span class="o" style="font-weight: 600;">/</span><span class="nx">examples</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tests</span><span class="o" style="font-weight: 600;">/</span><span class="nx">run</span><span class="o" style="font-weight: 600;">-</span><span class="nx">unit</span><span class="o" style="font-weight: 600;">-</span><span class="nx">test</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scrm</span><span class="o" style="font-weight: 600;">/</span></span></pre>
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<strong>debian/scrm.docs</strong>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">NEWS.md</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">README.md</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">debian/README.test</span></pre>
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<a href="https://salsa.debian.org/med-team/scrm/-/compare/63390d493b31fb25324a89a08f1793326c5cb637...3bc8ed56a2b78bc9db8a92b470c88f7a1382d6de#f0d63cdb80958b15f48386f7972ca34625bb3a80"><strong>debian/scrm.install</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span> <span class="nx">usr</span></span></pre>
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<a href="https://salsa.debian.org/med-team/scrm/-/compare/63390d493b31fb25324a89a08f1793326c5cb637...3bc8ed56a2b78bc9db8a92b470c88f7a1382d6de#11712ea715dc3a858ce3b97a01624dfd61fcf2c6"><strong>debian/scrm.manpages</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">usr/share/man/man1/*.1</span></pre>
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<a href="https://salsa.debian.org/med-team/scrm/-/compare/63390d493b31fb25324a89a08f1793326c5cb637...3bc8ed56a2b78bc9db8a92b470c88f7a1382d6de#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,7 +9,7 @@ if [ "${AUTOPKGTEST_TMP}" = "" ] ; then</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Double quote below to expand the temporary directory variable now versus</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># later is on purpose.</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># shellcheck disable=SC2064</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"><span class="idiff left right">#</span> trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,15 +17,16 @@ cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"</td>
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="shell"><span class="nb" style="color: #0086b3;">gunzip</span> <span class="nt" style="color: #000080;">-r</span> <span class="k" style="font-weight: 600;">*</span></span>
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd </span>tests/</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"><span class="idiff left right">#</span>cd tests/</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Test the binaries using scrms build in debug checks</span></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$1</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=<span class="idiff left right">=</span></span> <span class="s2" style="color: #d14;">"osx"</span> <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$1</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">"osx"</span> <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"On macOS => Skipping valgrind checks"</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="shell"> <span class="nv" style="color: #008080;">valgrind</span><span class="o" style="font-weight: 600;">=</span>0</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="shell"><span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">valgrind</span><span class="o" style="font-weight: 600;">=</span>1</span>
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="shell"></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-x</span></span>
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29
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="shell">make scrm scrm_dbg <span class="o" style="font-weight: 600;">||</span> <span class="nb" style="color: #0086b3;">exit </span>1</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="shell">make scrm_asan 2> /dev/null</span>
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31
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="shell"><span class="nv" style="color: #008080;">supports_sanitizers</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$?</span></span>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/scrm/-/compare/63390d493b31fb25324a89a08f1793326c5cb637...3bc8ed56a2b78bc9db8a92b470c88f7a1382d6de#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Name: scrm</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Bug-Database: https://github.com/scrm/scrm/issues</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Bug-Submit: https://github.com/scrm/scrm/issues/new</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> - Author: ></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Paul R. Staab and Sha Zhu and Dirk Metzler and Gerton Lunter</span>
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