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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/be45a30b44a02aa2df29e9bbded2146731d6fc68">be45a30b</a></strong>
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<span>by Steffen Moeller</span>
<i>at 2020-03-14T00:03:58+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Uploaded initial version of package for DNApi
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<h4>1 changed file:</h4>
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<a href="#d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba">
debian/TODO
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<h4>Changes:</h4>
<li id="d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba">
<a href="https://salsa.debian.org/med-team/bcbio/-/commit/be45a30b44a02aa2df29e9bbded2146731d6fc68#d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba"><strong>debian/TODO</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -103,6 +103,12 @@ package libjs-scribl (in new queue) (in crash space)</td>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="mosel"><span class="s1" style="color: #d14;"> A surprisingly neat JavaScript library to show genomic features</span></span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="mosel"><span class="s1" style="color: #d14;"> Needed for DFSG-compliance of seqcluster</span></span>
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<td class="diff-line-num new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="mosel"><span class="s1" style="color: #d14;">Package dnapi with python3-dnapilib</span></span>
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<td class="diff-line-num new old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="mosel"><span class="s1" style="color: #d14;"> https://github.com/jnktsj/DNApi</span></span>
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<td class="diff-line-num new old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="mosel"><span class="s1" style="color: #d14;"> Likely a "recommends" only:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="mosel"><span class="s1" style="color: #d14;"> bcbio/srna/sample.py: from dnapilib.apred import iterative_adapter_prediction</span></span>
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="mosel"></span>
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<td class="diff-line-num new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="mosel"><span class="s1" style="color: #d14;">Package MultiQC (in crash space) (rejected from new)</span></span>
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<td class="diff-line-num old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="mosel"><span class="s1" style="color: #d14;"> https://salsa.debian.org/med-team/multiqc</span></span>
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<td class="diff-line-num old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="mosel"><span class="s1" style="color: #d14;"> Addressed https://github.com/ewels/MultiQC/issues/800 by substuting</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -278,12 +284,6 @@ package qualimap</td>
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="mosel"><span class="s1" style="color: #d14;"> Unfortunately some of the Java code that is needed as predepenceny is simply lost see</span></span>
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="mosel"><span class="s1" style="color: #d14;"> https://alioth-lists.debian.net/pipermail/debian-med-packaging/2016-January/038322.html</span></span>
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="mosel"><span class="s1" style="color: #d14;">References to packages that have not yet chased up</span></span>
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="mosel"><span class="s1" style="color: #d14;">--------------------------------------------------</span></span>
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="mosel"><span class="s1" style="color: #d14;">Likely a "recommends" only:</span></span>
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="mosel"><span class="s1" style="color: #d14;">bcbio/srna/sample.py: from dnapilib.apred import iterative_adapter_prediction</span></span>
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="mosel"></span>
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<td class="diff-line-num old_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="mosel"><span class="s1" style="color: #d14;">Packages no longer used by bcbio</span></span>
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<pre style="margin: 0;"> <span id="LC289" class="line" lang="mosel"><span class="s1" style="color: #d14;">--------------------------------</span></span>
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