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<h3>
Pranav Ballaney pushed to branch master
at <a href="https://salsa.debian.org/med-team/idba">Debian Med / idba</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/idba/-/commit/c1fc0c70ee5471c90576c5af622c0bc7f8a6888d">c1fc0c70</a></strong>
<div>
<span>by Pranav Ballaney</span>
<i>at 2020-03-12T10:43:25+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Renamed manpage folders
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/idba/-/commit/09f63509733e5e872c905dca7063bd3065bb9a39">09f63509</a></strong>
<div>
<span>by Pranav Ballaney</span>
<i>at 2020-03-13T10:32:25+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install bin/*.py in lib
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/idba/-/commit/4a49bfb33af69279c71e830b9e6fc5c497999919">4a49bfb3</a></strong>
<div>
<span>by Pranav Ballaney</span>
<i>at 2020-03-13T21:58:43+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added data sources
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/idba/-/commit/8685aa081faacd43a7b8269beac63d2d4b5d81b6">8685aa08</a></strong>
<div>
<span>by Pranav Ballaney</span>
<i>at 2020-03-13T22:13:38+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Changed manpage directories in debian/createmanpages
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/idba/-/commit/4f752ea3b02ab7ae79eb005130d926690eaecb2c">4f752ea3</a></strong>
<div>
<span>by Pranav Ballaney</span>
<i>at 2020-03-13T22:14:22+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updated changelog
</pre>
</li>
</ul>
<h4>15 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#ebcf9854ee19af4b7bf8405b283789c18769680f">
debian/createmanpages
</a>
</li>
<li class="file-stats">
<a href="#5e56c3be49eedbcded576c8e61837d3ec79f8673">
debian/idba-extra/filter_blat.1
→
debian/idba-extra-man/filter_blat.1
</a>
</li>
<li class="file-stats">
<a href="#c1bfd9adcf1e86cc502104fbc7a45a033410e8fe">
debian/idba-extra/filter_contigs.1
→
debian/idba-extra-man/filter_contigs.1
</a>
</li>
<li class="file-stats">
<a href="#631eec72accb655e053ec95d2ff55521fa636f57">
debian/idba-extra/fq2fa.1
→
debian/idba-extra-man/fq2fa.1
</a>
</li>
<li class="file-stats">
<a href="#18ccdb64dd05589638e76a5bde5a8419979d04c2">
debian/idba-extra/sim_reads.1
→
debian/idba-extra-man/sim_reads.1
</a>
</li>
<li class="file-stats">
<a href="#bc03bfcbabd7633ed11ea46ef9ae9d715bfb0ac6">
debian/idba-extra/sim_reads_tran.1
→
debian/idba-extra-man/sim_reads_tran.1
</a>
</li>
<li class="file-stats">
<a href="#c33595c7b24696398b2a75e651f443a3f5629fe4">
debian/idba-extra.manpages
</a>
</li>
<li class="file-stats">
<a href="#c14a71a7add4d896130a89fa9b53f899bd69da2b">
debian/idba/idba.1
→
debian/idba-man/idba.1
</a>
</li>
<li class="file-stats">
<a href="#64623395ccbf5dd30c20e98c0acc0727464fd85b">
debian/idba/idba_hybrid.1
→
debian/idba-man/idba_hybrid.1
</a>
</li>
<li class="file-stats">
<a href="#7368bb9f87c10dc3794bb047c72b96876b74cc99">
debian/idba/idba_tran.1
→
debian/idba-man/idba_tran.1
</a>
</li>
<li class="file-stats">
<a href="#710fea22c055eddc062a8af83fa6c3442d940433">
debian/idba/idba_ud.1
→
debian/idba-man/idba_ud.1
</a>
</li>
<li class="file-stats">
<a href="#9a7bce2e5a8cbfc78ff7a099208d43bdd2b15530">
debian/idba.install
</a>
</li>
<li class="file-stats">
<a href="#4e1c62844cd6b910dbc0a7fbb8705128c4d1385d">
debian/idba.manpages
</a>
</li>
<li class="file-stats">
<a href="#8773658ff0bae78805f8fd9d5d60ad9b05b1893b">
<span class="new-file">
+
debian/tests/test_data/data-source.sh
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
<hr>
<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,8 +18,17 @@ idba (1.1.3-6) UNRELEASED; urgency=medium</td>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC18" class="line" lang="mosel"> <span class="p">*</span> <span class="k" style="font-weight: 600;">Set</span> <span class="n" style="color: #333;">upstream</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">fields</span><span class="p">:</span> <span class="n" style="color: #333;">Bug</span><span class="p">-</span><span class="n" style="color: #333;">Database</span><span class="p">,</span> <span class="n" style="color: #333;">Repository</span><span class="p">.</span></span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
19
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
19
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC19" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Make</span> <span class="n" style="color: #333;">sure</span> <span class="n" style="color: #333;">sim_reads</span> <span class="n" style="color: #333;">will</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">found</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">suite</span></span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
20
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<td class="diff-line-num new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
20
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC20" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">few</span> <span class="n" style="color: #333;">manpages</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">tools</span> <span class="n" style="color: #333;">inside</span> <span class="n" style="color: #333;">idba</span><span class="p">-</span><span class="n" style="color: #333;">extra</span> <span class="p">(</span><span class="n" style="color: #333;">more</span> <span class="n" style="color: #333;">would</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">nice</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
21
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC21" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">sim_reads</span><span class="m" style="color: #099;">.1</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
22
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC22" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">sim_reads_tran</span><span class="m" style="color: #099;">.1</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
23
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC23" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Install</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">debian</span><span class="p">/</span><span class="n" style="color: #333;">tmp</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">avoid</span> <span class="n" style="color: #333;">warnings</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">dh_missing</span></span>
</pre>
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21
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<td class="diff-line-num new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="mosel"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
22
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<td class="diff-line-num new_line old" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Pranav</span> <span class="n" style="color: #333;">Ballaney</span> <span class="p"><</span><span class="n" style="color: #333;">ballaneypranav</span><span class="p">@</span><span class="n" style="color: #333;">gmail</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">></span> <span class="n" style="color: #333;">Tue</span><span class="p">,</span> <span class="m" style="color: #099;">10</span> <span class="n" style="color: #333;">Mar</span> <span class="m" style="color: #099;">2020</span> <span class="m" style="color: #099;">01</span><span class="p">:</span><span class="m" style="color: #099;">12</span><span class="p">:</span><span class="m" style="color: #099;">44</span> <span class="p">+</span><span class="m" style="color: #099;">0530</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="mosel"> <span class="p">[</span> <span class="n" style="color: #333;">Pranav</span> <span class="n" style="color: #333;">Ballaney</span> <span class="p">]</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Renamed</span> <span class="n" style="color: #333;">manpage</span> <span class="n" style="color: #333;">folders</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Install</span> <span class="n" style="color: #333;">bin</span><span class="p">/*.</span><span class="n" style="color: #333;">py</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">lib</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Added</span> <span class="n" style="color: #333;">data</span> <span class="n" style="color: #333;">sources</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Changed</span> <span class="n" style="color: #333;">manpage</span> <span class="n" style="color: #333;">directories</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">debian</span><span class="p">/</span><span class="n" style="color: #333;">createmanpages</span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Pranav</span> <span class="n" style="color: #333;">Ballaney</span> <span class="p"><</span><span class="n" style="color: #333;">ballaneypranav</span><span class="p">@</span><span class="n" style="color: #333;">gmail</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">></span> <span class="n" style="color: #333;">Fri</span><span class="p">,</span> <span class="m" style="color: #099;">13</span> <span class="n" style="color: #333;">Mar</span> <span class="m" style="color: #099;">2020</span> <span class="m" style="color: #099;">22</span><span class="p">:</span><span class="m" style="color: #099;">13</span><span class="p">:</span><span class="m" style="color: #099;">47</span> <span class="p">+</span><span class="m" style="color: #099;">0530</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="mosel"><span class="n" style="color: #333;">idba</span> <span class="p">(</span><span class="m" style="color: #099;">1.1.3</span><span class="p">-</span><span class="m" style="color: #099;">5</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="mosel"></span>
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<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#ebcf9854ee19af4b7bf8405b283789c18769680f"><strong>debian/createmanpages</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/sh</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"><span class="nv" style="color: #008080;">MANDIR</span><span class="o" style="font-weight: 600;">=</span>debian/idba</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"><span class="nv" style="color: #008080;">MANDIR</span><span class="o" style="font-weight: 600;">=</span>debian/idba<span class="idiff left right">-man</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="shell"><span class="nb" style="color: #0086b3;">mkdir</span> <span class="nt" style="color: #000080;">-p</span> <span class="nv" style="color: #008080;">$MANDIR</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="nv" style="color: #008080;">VERSION</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span>dpkg-parsechangelog | <span class="nb" style="color: #0086b3;">awk</span> <span class="s1" style="color: #d14;">'/^Version:/ {print $2}'</span> | <span class="nb" style="color: #0086b3;">sed</span> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/^[0-9]*://'</span> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/-.*//'</span> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'s/[+~]dfsg$//'</span><span class="sb" style="color: #d14;">`</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -41,7 +41,7 @@ echo "$MANDIR/*.1" > debian/${PROGNAME}.manpages</td>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">################ for idba-extra package</span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="shell"><span class="nv" style="color: #008080;">MANDIR</span><span class="o" style="font-weight: 600;">=</span>debian/idba-extra</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="shell"><span class="nv" style="color: #008080;">MANDIR</span><span class="o" style="font-weight: 600;">=</span>debian/idba-extra<span class="idiff left right">-man</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="shell"><span class="nb" style="color: #0086b3;">mkdir</span> <span class="nt" style="color: #000080;">-p</span> <span class="nv" style="color: #008080;">$MANDIR</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="shell"><span class="nv" style="color: #008080;">progname</span><span class="o" style="font-weight: 600;">=</span>fq2fa</span>
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<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#5e56c3be49eedbcded576c8e61837d3ec79f8673"><strong>debian/idba-extra/filter_blat.1</strong>
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<strong>debian/idba-extra-man/filter_blat.1</strong>
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<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#c1bfd9adcf1e86cc502104fbc7a45a033410e8fe"><strong>debian/idba-extra/filter_contigs.1</strong>
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<strong>debian/idba-extra-man/filter_contigs.1</strong>
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<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#631eec72accb655e053ec95d2ff55521fa636f57"><strong>debian/idba-extra/fq2fa.1</strong>
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<strong>debian/idba-extra-man/fq2fa.1</strong>
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<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#18ccdb64dd05589638e76a5bde5a8419979d04c2"><strong>debian/idba-extra/sim_reads.1</strong>
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<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#bc03bfcbabd7633ed11ea46ef9ae9d715bfb0ac6"><strong>debian/idba-extra/sim_reads_tran.1</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">debian/idba-extra/*.1</span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/idba-extra<span class="idiff left right">-man</span>/*.1</span></pre>
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<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#c14a71a7add4d896130a89fa9b53f899bd69da2b"><strong>debian/idba/idba.1</strong>
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<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#64623395ccbf5dd30c20e98c0acc0727464fd85b"><strong>debian/idba/idba_hybrid.1</strong>
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<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#7368bb9f87c10dc3794bb047c72b96876b74cc99"><strong>debian/idba/idba_tran.1</strong>
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<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#9a7bce2e5a8cbfc78ff7a099208d43bdd2b15530"><strong>debian/idba.install</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span><span class="nx">i</span><span class="o" style="font-weight: 600;">*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span><span class="nx">s</span><span class="o" style="font-weight: 600;">*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span><span class="nx">v</span><span class="o" style="font-weight: 600;">*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="php"><span class="c1" style="color: #998; font-style: italic;"># run-unittest.py should probably go to documentation</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span><span class="nx">run</span><span class="o" style="font-weight: 600;">-</span><span class="nx">unittest</span><span class="o" style="font-weight: 600;">.</span><span class="nx">py</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">idba</span></span></pre>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/*.</span><span class="nx">py</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">idba</span></span></pre>
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<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#4e1c62844cd6b910dbc0a7fbb8705128c4d1385d"><strong>debian/idba.manpages</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">debian/idba/*.1</span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/idba<span class="idiff left right">-man</span>/*.1</span></pre>
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<a href="https://salsa.debian.org/med-team/idba/-/compare/6cff0c2377861eb179d4ec06514df75df1323510...4f752ea3b02ab7ae79eb005130d926690eaecb2c#8773658ff0bae78805f8fd9d5d60ad9b05b1893b"><strong>debian/tests/test_data/data-source.sh</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># All the data used for testing was obtained from a Google Code repository,</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># maintained by the authors of the program.</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># https://code.google.com/archive/p/hku-idba/downloads</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># It was later modified to reduce the file size generated for testing.</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># (The original files generate testing data on the order of gigabytes.)</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"></span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># For idba-tran</span></span>
</pre>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell">wget https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/hku-idba/tran-sample-data.tar.gz</span>
</pre>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># For idba-hybrid</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell">wget https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/hku-idba/hybrid-sample-data.tar.gz</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># For idba-ud</span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell">wget https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/hku-idba/lacto-genus.tar.gz</span></pre>
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