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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5aa19473f9afc5d58ac4c1d8944355f070a63a03">5aa19473</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-13T13:44:49+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5aa19473f9afc5d58ac4c1d8944355f070a63a03#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 13 Mar 2020 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 13 Mar 2020 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">8</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">7</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 101 | {practice,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">5</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">4</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> dcm2niix | 43 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> orthanc-wsi | 39 | {oncology,laboratory,imaging,his,practice} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> amide | 36 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicom3tools | 31 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 3<span class="idiff left right">0</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> htsjdk | 2<span class="idiff left right">9</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope | 3<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> htsjdk | 2<span class="idiff left right">8</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> gdcm | 21 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> pixelmed | 18 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gnumed-server | 17 | {practice} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,39 +21,41 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> openslide | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> adun.app | 13 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> biojava-live | 13 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> insighttoolkit4 | 1<span class="idiff left right">2</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> insighttoolkit4 | 1<span class="idiff left right">3</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> jebl2 | 12 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> vtk-dicom | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> mia | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> plastimatch | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> psychopy | 11 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> tree-puzzle | 11 | {bio,bio-phylogeny,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> biosig4c++ | 10 | {imaging,physics} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> gdcm | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> librg-utils-perl | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> ncbi-entrez-direct | 10 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> psychopy | 10 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> fastlink | 9 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> melting | 9 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> ncbi-seg | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> norsp | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> sortmerna | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> staden | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> arden | 8 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> <span class="idiff left right">cgview </span> | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> <span class="idiff left right">diamond-aligner</span> | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> jaligner | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> maqview | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> mauve-aligner | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> mipe | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> neobio | 8 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> radiant | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> sigma-align | 8 | {bio-phylogeny,bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> ampliconnoise | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> cgview | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> ea-utils | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> ecopcr | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> obitools | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> paml | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> phyutility | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> piler | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> rdp-readseq | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> sibsim4 | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> treeview | 7 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> anfo | 6 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -61,9 +63,7 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> bio-tradis | 6 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> dazzdb | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> diamond-aligner | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> dicompyler | 6 | {oncology} | </span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> edtsurf | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> embassy-domainatrix | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> embassy-domalign | 6 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -71,22 +71,24 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> freecontact | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> gasic | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> idba | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> king-probe | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> libdivsufsort | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> libsbml | 6 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> paml | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> paraclu | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> perm | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> predictprotein | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> prime-phylo | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> probabel | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> pscan-tfbs | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> rdp-readseq | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> saint | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> seqsero | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> squizz | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> transtermhp | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> zalign | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> alter-sequence-alignment | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> assemblytics | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> bppsuite | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> brig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> codonw | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> daligner | 5 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> estscan | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -95,7 +97,6 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> indelible | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> ipig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> jellyfish1 | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext"> king-probe | 5 | {bio} | </span>
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100
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> libncl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> lucy | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -110,18 +111,18 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> poretools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> proalign | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> pscan-chip | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> pscan-tfbs | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> salmon | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> scythe | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> seer | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> sickle | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> spread-phy | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext"> <span class="idiff left right">transtermhp | 5</span> | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> <span class="idiff left right">abacas | 4</span> | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> baitfisher | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> beads | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> beast-mcmc | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> bitseq | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> brig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> canu | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> centrifuge | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> clonalorigin | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -129,20 +130,18 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> dascrubber | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> elastix | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> elph | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> freebayes | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> lamarc | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> libpal-java | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> logol | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> maffilter | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> mptp | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="plaintext"> openslide | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="plaintext"> parsnp | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> pbdagcon | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> phipack | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> plasmidseeker | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> quorum | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> rambo-k | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="plaintext"> rdp-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> rdp-classifier | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> relion | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> repeatmasker-recon | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -152,7 +151,6 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> transrate-tools | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> velvetoptimiser | 4 | {bio} | </span>
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153
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> vsearch | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="plaintext"> abacas | 3 | {bio} | </span>
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154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> andi | 3 | {bio} | </span>
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157
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> bandage | 3 | {bio} | </span>
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156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> bart-view | 3 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -164,7 +162,6 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> dindel | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> dwgsim | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> fastml | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> freebayes | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> fsm-lite | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> gatb-core | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -174,13 +171,16 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> libgff | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> libminc | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> nanook | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> openslide | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> orthanc-dicomweb | 3 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"> parsnp | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> patman | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> phybin | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> pilon | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> prottest | 3 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> qcumber | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> rampler | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext"> rdp-alignment | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> roguenarok | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> rtax | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> runcircos-gui | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -199,6 +199,7 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> biosig4c++ | 2 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> ctn | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> cufflinks | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext"> hunspell-en-med | 2 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> igor | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> libsmithwaterman | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> metaphlan2 | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -216,13 +217,13 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> surankco | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> trace2dbest | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> tree-puzzle | 2 | {cloud,bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"> volpack | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> edflib | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> embassy-phylip | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> emmax | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> fasta3 | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="plaintext"> hunspell-en-med | 1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> kma | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> kmerresistance | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> libbio-mage-utils-perl | 1 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -245,7 +246,6 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> thesias | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> tnseq-transit | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> varscan | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC248" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> vtk-dicom | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> atropos | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5aa19473f9afc5d58ac4c1d8944355f070a63a03#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 13 Mar 2020 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 13 Mar 2020 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,8 +17,9 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> bowtie2 | 2.3.5.1 | 2.4.1 | Alexandre Mestiashvili,Andreas Tille | Michael R. Crusoe | 2019-12-19 16:34:16+00</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> ctdopts | 1.2 | 1.3 | Michael R. Crusoe | Michael R. Crusoe | 2018-02-28 12:34:26+00</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> cwltool | 2.0.20200224214940 | 2.0.202003<span class="idiff left right">03141624</span> | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> cwltool | 2.0.20200224214940 | 2.0.202003<span class="idiff left right">12183052</span> | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> delly | 0.8.2 | 0.8.3 | Steffen Moeller | Andrius Merkys | 2020-02-06 13:05:04+00</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> elastix | 4.9.0 | 5.0.0 | Gert Wollny,Steve M. Robbins | Andreas Tille | 2019-01-15 11:50:11+00</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> epigrass | 2.5.0 | 2.6.0 | Andreas Tille,Thorsten Alteholz | Andreas Tille | 2019-09-13 19:48:50+00</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -98,7 +99,7 @@ Last-Update: Fri, 13 Mar 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00</span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00</span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="plaintext">(9<span class="idiff left right">6</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext">(9<span class="idiff left right">7</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> source | id | severity | title </span>
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