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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fa7b25bb4f2d5a6b1e32a2364f485a5d442d9741">fa7b25bb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-15T01:44:18+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
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</li>
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fa7b25bb4f2d5a6b1e32a2364f485a5d442d9741#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: S<span class="idiff left right">at, 14 Mar 2020 13</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: S<span class="idiff left right">un, 15 Mar 2020 01</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------</span>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fa7b25bb4f2d5a6b1e32a2364f485a5d442d9741#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: S<span class="idiff left right">at, 14 Mar 2020 13</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: S<span class="idiff left right">un, 15 Mar 2020 01</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -151,7 +151,7 @@ Last-Update: Sat, 14 Mar 2020 13:42:04 +0000</td>
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> dicom3tools | 815628 | normal | dicom3tools: dcintro man page missing</span>
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<td class="diff-line-num old_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> dicomscope | 927089 | normal | dicomscope-doc: error merging doc-base files: format pdf already defined</span>
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<td class="diff-line-num old_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> discosnp | 942404 | serious | discosnp: flaky autopkgtest: discoRes_k_31_c_auto_D_100_P_1_b_0_coherent.fa: No such file or directory</span>
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="plaintext"> drmaa | 953832 | serious | <span class="idiff left right">drmaa: autopkgtest failure: RuntimeError: Could not find drmaa library</span></span>
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> drmaa | 953832 | serious | <span class="idiff left right">cannot allocate memory in static TLS block</span></span>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> ea-utils | 846858 | normal | src:ea-utils: New version available</span>
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<td class="diff-line-num old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
156
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156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> ea-utils | 862118 | wishlist | ea-utils: New upstream version available</span>
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<td class="diff-line-num old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> elastix | 909280 | wishlist | elastix: New upstream available</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -224,6 +224,7 @@ Last-Update: Sat, 14 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> opensurgsim | 912110 | important | opensurgsim FTBFS: test failures</span>
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<td class="diff-line-num old_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> opensurgsim | 914338 | normal | opensurgsim ftbfs with ld --as-needed</span>
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<td class="diff-line-num old_line" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> orthanc | 829380 | wishlist | orthanc: please provide orthanc_upgrade script</span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="plaintext"> orthanc | 953884 | wishlist | FTBFS with Boost 1.71</span>
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228
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> orthanc-postgresql | 829383 | wishlist | orthanc-postgresql: please provide backup script</span>
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229
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> orthanc-webviewer | 828949 | minor | orthanc-webviewer: "better" suggestion for cache location</span>
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230
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> paleomix | 933750 | normal | paleomix: Port to Python3 needed</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -247,7 +248,6 @@ Last-Update: Sat, 14 Mar 2020 13:42:04 +0000</td>
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> psychopy | 829424 | normal | psychopy: ioHub uses inappropriate PID file location</span>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> psychopy | 953052 | important | psychopy: python2 dependencies</span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> psychopy | 953053 | important | psychopy: missing python3 dependencies</span>
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="plaintext"> psychopy | 953846 | serious | psychopy: ships /usr/lib/python3/dist-packages/packaging/__init__.py</span>
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> pynast | 937488 | normal | pynast: Python2 removal in sid/bullseye</span>
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<td class="diff-line-num old_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> pynast | 948081 | serious | pynast build depends on and recommends the removed blast2 transitional package</span>
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<td class="diff-line-num old_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> python-biom-format | 820060 | normal | python-biom-format: broken on big-endian architectures</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -269,6 +269,7 @@ Last-Update: Sat, 14 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"> qiime | 950842 | serious | autopkg tests fail with Python 3.8</span>
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="plaintext"> qrisk2 | 912118 | normal | qrisk2: 2017 upstream release</span>
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="plaintext"> qrisk2 | 912119 | normal | qrisk2: please provide qrisk3</span>
</pre>
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext"> ragout | 953904 | serious | ragout: autopkgtest failure: "sibelia" is not installed.</span>
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> rapmap | 909766 | important | Use Debian packaged spdlog instead of code copy of old version</span>
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"> relion | 952003 | serious | relion: FTBFS: src/mpi.cpp:56:23: error: call to ‘MPI_Errhandler_set’ declared with attribute error: MPI_Errhandler_set was removed in MPI-3.0. Use MPI_Comm_set_errhandler instead.</span>
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> salmon | 952102 | serious | salmon: FTBFS: SalmonAlevin.cpp:780:6: error: ‘class rapmap::utils::MappingConfig’ has no member named ‘maxSlack’</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="295" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -295,10 +296,11 @@ Last-Update: Sat, 14 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="plaintext"> tree-puzzle | 890790 | minor | tree-puzzle: Please provide autopkgtest</span>
</pre>
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="plaintext"> tree-puzzle | 951984 | serious | tree-puzzle: FTBFS: mpi.h:322:57: error: static assertion failed: "MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead."</span>
</pre>
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="plaintext"> treeviewx | 846481 | minor | src:treeviewx: Please remove statically linked code copy of libncl</span>
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="plaintext"> uc-echo | 953898 | serious | uc-echo: arm64 autopkgtest failure: NeighborJoinParam [...] failed to execute.</span>
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300
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="plaintext"> unanimity | 938751 | serious | unanimity: Python2 removal in sid/bullseye</span>
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299
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<td class="diff-line-num new_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
301
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="plaintext"> unanimity | 939506 | serious | unanimity ftbfs in unstable</span>
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300
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<td class="diff-line-num new_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
302
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="plaintext"> xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation</span>
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301
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303
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="plaintext"> xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"</span>
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302
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304
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="plaintext"> xmedcon | 924017 | normal | desktop entry</span>
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303
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="plaintext">(19<span class="idiff left right">4</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="plaintext">(19<span class="idiff left right">6</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC306" class="line" lang="plaintext"></span></pre>
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