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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/minimap2">Debian Med / minimap2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/minimap2/-/commit/f7f27ee500dce8c735fcd1800725c280c3000d1d">f7f27ee5</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-15T04:06:20+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fixed compilation of downstream nanopolish
</pre>
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<h4>7 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#9f2482170b999fac9ff04e3f99d1ed5b8a675184">
debian/libminimap2-dev.dirs
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<li class="file-stats">
<a href="#3bfc78cea2416194d1d9640e81241465d700ff0b">
debian/libminimap2-dev.install
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<li class="file-stats">
<a href="#d4657693b4cbba1934a7abddc0a140b4505aebf7">
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+
debian/patches/ar.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/minimap2/-/commit/f7f27ee500dce8c735fcd1800725c280c3000d1d#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">minimap2 (2.17+dfsg-5) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Not stripping the .a file with Debian</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * d/control: Added Rules-Requires-Root flag</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Sun, 15 Mar 2020 01:24:40 +0100</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">minimap2 (2.17+dfsg-4) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Added include files</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Sat, 14 Mar 2020 23:46:18 +0100</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">minimap2 (2.17+dfsg-3) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> [Steffen Moeller]</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> * Created -dev package</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> * Standards-Version: 4.5.0</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/minimap2/-/commit/f7f27ee500dce8c735fcd1800725c280c3000d1d#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,6 +15,7 @@ Standards-Version: 4.5.0</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/minimap2</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/minimap2.git</span>
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Homepage: https://github.com/lh3/minimap2</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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18
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span>
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19
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Package: minimap2</span>
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20
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Architecture: any</span>
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<li id="9f2482170b999fac9ff04e3f99d1ed5b8a675184">
<a href="https://salsa.debian.org/med-team/minimap2/-/commit/f7f27ee500dce8c735fcd1800725c280c3000d1d#9f2482170b999fac9ff04e3f99d1ed5b8a675184"><strong>debian/libminimap2-dev.dirs</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">usr/lib</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">usr/include</span></pre>
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<li id="3bfc78cea2416194d1d9640e81241465d700ff0b">
<a href="https://salsa.debian.org/med-team/minimap2/-/commit/f7f27ee500dce8c735fcd1800725c280c3000d1d#3bfc78cea2416194d1d9640e81241465d700ff0b"><strong>debian/libminimap2-dev.install</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="o" style="font-weight: 600;">*.</span><span class="nx">a</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="o" style="font-weight: 600;">*.</span><span class="nx">h</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="k" style="font-weight: 600;">include</span><span class="o" style="font-weight: 600;">/</span></span></pre>
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<li id="d4657693b4cbba1934a7abddc0a140b4505aebf7">
<a href="https://salsa.debian.org/med-team/minimap2/-/commit/f7f27ee500dce8c735fcd1800725c280c3000d1d#d4657693b4cbba1934a7abddc0a140b4505aebf7"><strong>debian/patches/ar.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gh" style="color: #999;">Index: minimap2/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- minimap2.orig/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ minimap2/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">@@ -36,7 +36,8 @@</span> minimap2-lite:example.o libminimap2.a</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> $(CC) $(CFLAGS) $< -o $@ -L. -lminimap2 $(LIBS) $(LDFLAGS)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> libminimap2.a:$(OBJS)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(AR) -csru $@ $(OBJS)</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ rm -f $@</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(AR) csrD $@ $(OBJS)</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> sdust:sdust.c kalloc.o kalloc.h kdq.h kvec.h kseq.h ketopt.h sdust.h</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> $(CC) -D_SDUST_MAIN $(CFLAGS) $< kalloc.o -o $@ -lz $(LDFLAGS)</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/minimap2/-/commit/f7f27ee500dce8c735fcd1800725c280c3000d1d#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,3 +2,4 @@ hardening.patch</td>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">do_not_use_natbib.bst.patch</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">simde</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">addLTO.patch</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">ar.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/minimap2/-/commit/f7f27ee500dce8c735fcd1800725c280c3000d1d#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,8 +34,14 @@ endif</td>
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34
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">override_dh_compress:</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> dh_compress --exclude=.pdf</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"># No idea why, but the stipping ruined the index of the .a file as spotted by nanopolish</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"># as its reverse dependency</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext">override_dh_strip:</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> dh_strip -Xlibminimap2.a</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> dh_auto_clean</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> rm -f MT-human.mmi</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> rm -f tex/minimap2.aux tex/minimap2.bbl tex/minimap2.blg tex/minimap2.log tex/minimap2.out tex/minimap2.pdf</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> rm -f libminimap2.a</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"></span></pre>
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