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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/libmaus2">Debian Med / libmaus2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/50a37978ac51873b44172b365e987312dd54e5db">50a37978</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-17T14:51:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.712+ds</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
</a>
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<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
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<li class="file-stats">
<a href="#69caa8fdb91e88b3651ae37841ef301dd6b9411a">
libmaus2.pc.in
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<li class="file-stats">
<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
</a>
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<li class="file-stats">
<a href="#cba616b4aafab7206a181f459f04fa028ba20c16">
src/libmaus2/LibMausConfig.hpp.in
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<li class="file-stats">
<a href="#963455391901ca06ec01c43d622582d1e336ba55">
<span class="new-file">
+
src/libmaus2/avl/AVLSet.hpp
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<li class="file-stats">
<a href="#1a337f4d4106527d6453f67ce520c418907fe5ba">
src/libmaus2/bambam/BamAlignment.hpp
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<li class="file-stats">
<a href="#bf4edbc0b2bc540d9e3359fc75668cb3fec6c2c9">
src/libmaus2/bambam/BamAlignmentDecoderBase.hpp
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<li class="file-stats">
<a href="#e8500803b89251e092ea860b4aaa7be7e27028c4">
src/libmaus2/bambam/BamAlignmentDecoderInfo.hpp
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<li class="file-stats">
<a href="#86aa7c853b68c458bd77d63dc7b8e22e9d5d34e6">
src/libmaus2/bambam/BamBlockWriterBaseFactory.hpp
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<li class="file-stats">
<a href="#5b3fe30445264f170feed49e7afe273e36f63f21">
src/libmaus2/bambam/BamHeader.hpp
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<li class="file-stats">
<a href="#6f4c9cd04de86166a9ee98122b80eb9ccd7323bc">
src/libmaus2/bambam/BamHeaderLowMem.hpp
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<li class="file-stats">
<a href="#c2ad788078b4c1b5981285b1a7cdcf74c521e6e5">
<span class="new-file">
+
src/libmaus2/bambam/BamHeaderReadGroupInterface.hpp
</span>
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<li class="file-stats">
<a href="#be52cc3b272de65b7933c30a09702a737b37a8c2">
src/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp
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<li class="file-stats">
<a href="#237f5b364e65c5416215623467d2ebf74d22d27e">
src/libmaus2/bambam/ChecksumsFactory.cpp
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<li class="file-stats">
<a href="#bc22fa3c234d6ea0cc3b47dad95044dc201fc0e6">
src/libmaus2/bambam/ChecksumsFactory.hpp
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<li class="file-stats">
<a href="#283b5f6defe91a50d4923e4f13e1e15e41be5c02">
src/libmaus2/bambam/CigarRunLengthDecoder.hpp
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<li class="file-stats">
<a href="#33b6c7be83dad21524710d15b822a5cc70a188b5">
src/libmaus2/bambam/DupMarkBase.hpp
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<li class="file-stats">
<a href="#0e6b17a54d0162ff963cc67851a4698b1e0456f7">
src/libmaus2/bambam/OpticalComparator.hpp
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<li class="file-stats">
<a href="#806dc2cbadb0bd4bc25d040c6b3b9a0c0e170399">
src/libmaus2/bambam/ReadEndsBase.hpp
</a>
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<li class="file-stats">
<a href="#d8ab60bfa7d4d09ce24c9ee93d1088e7d5a80c7e">
src/libmaus2/bambam/Scram.c
</a>
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<li class="file-stats">
<a href="#7be65568294af3ddc5b09c163358c768729a1fef">
src/libmaus2/bambam/parallel/BlockMergeControl.hpp
</a>
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<li class="file-stats">
<a href="#3d84b0cdec70662e7696af8f4cf98dd7c3c9a27e">
src/libmaus2/bambam/parallel/ScramCramEncoding.hpp
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<li class="file-stats">
<a href="#9371f62f4d2376e6ed5e7710cc6de119d87c5a63">
<span class="new-file">
+
src/libmaus2/fastx/GCContent.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#483e822d79d86c3d9c93071b3d8138f13679b6a6">
src/libmaus2/geometry/RangeSet.hpp
</a>
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<li class="file-stats">
<a href="#28bca8c59e4d44864e22d3c25b5e171045ef2718">
src/libmaus2/gtf/Exon.hpp
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</li>
<li class="file-stats">
<a href="#9f663e380266b1d6a0d26afe7f1fb5da77cc7c53">
src/libmaus2/gtf/GTFData.hpp
</a>
</li>
<li class="file-stats">
<a href="#10542a61187e299e801e74981862748b714c9067">
src/libmaus2/gtf/Gene.hpp
</a>
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<li class="file-stats">
<a href="#865be38ec810ef4287fe40f9e058b0d8f4c03dee">
src/libmaus2/gtf/Transcript.hpp
</a>
</li>
<li class="file-stats">
<a href="#18935d3bcbb5e2443717b60b5cbfa614ace55f62">
src/libmaus2/gtf/TranscriptRangeSets.hpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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