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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ragout">Debian Med / ragout</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/-/commit/a17c73dfffbd2f303af1c271f1fffa6847797503">a17c73df</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-18T11:40:44+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/-/commit/93dc2cfd8d6c1be93fa1642c36d21cc9f6366905">93dc2cfd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-18T11:40:46+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.3</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/-/commit/8063f8d6a63ec7da20344e24dfd30c52c02f06ee">8063f8d6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-18T11:42:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.3'
Update to upstream version '2.3'
with Debian dir f86039be2ed82208c3179e1d730c4fd872356d36</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/-/commit/196e732f1bf4c1b01b140452210d8d568cd83292">196e732f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-18T11:42:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/-/commit/38c556e1afb93201f1f945d89ecd23e911d88c5c">38c556e1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-18T19:47:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adjust patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/-/commit/027b961e1250a0847d09c192a10469a8562bf052">027b961e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-18T19:50:06+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-Depends: python3-setuptools
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/-/commit/53c2a2b557240870a13fa089da10b2fb8a3581aa">53c2a2b5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-18T19:57:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Hopefully sibelia will be accepted soon
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#571a97527779cbb061b99f890157085f6acf03f6">
bin/ragout
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
<span class="deleted-file">
−
debian/patches/2to3.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#0441f9cf9efd4527ecaebe5ba811f9ebe4f0b1e0">
debian/tests/control
→
debian/tests/control_needs_sibelia
</a>
</li>
<li class="file-stats">
<a href="#adf144f57098687d6b958a6143cce31566e93b81">
docs/INSTALL.md
</a>
</li>
<li class="file-stats">
<a href="#56fe2a53c1e2ac524f33a1db8ee6bf562e536dd7">
docs/NEWS.md
</a>
</li>
<li class="file-stats">
<a href="#ca985c40ed4a8b4213d6d3029f73f8173c54555e">
ragout/__version__.py
</a>
</li>
<li class="file-stats">
<a href="#b6b8b5414daa7b8069a253dccaa201d0508fab86">
ragout/assembly_graph/assembly_refine.py
</a>
</li>
<li class="file-stats">
<a href="#22a1ef7d3a2e5fc83e3dd8a3713222ca5f8aa197">
ragout/breakpoint_graph/breakpoint_graph.py
</a>
</li>
<li class="file-stats">
<a href="#517cc8e358565ad7984801d76e285fb78ca64406">
ragout/breakpoint_graph/chimera_detector.py
</a>
</li>
<li class="file-stats">
<a href="#b2e6ad04c77950174dff7749daa964b5dd4ea48d">
ragout/breakpoint_graph/inferer.py
</a>
</li>
<li class="file-stats">
<a href="#bf89e78f975791f40c9c9b7fd4105a1f07d41bf9">
ragout/breakpoint_graph/permutation.py
</a>
</li>
<li class="file-stats">
<a href="#566a22accf1dca3a2d5713f52610fb883209c33d">
ragout/breakpoint_graph/repeat_resolver.py
</a>
</li>
<li class="file-stats">
<a href="#ace0103567b3cbd605fcc29491615cad8748afff">
ragout/maf2synteny/maf2synteny.py
</a>
</li>
<li class="file-stats">
<a href="#3a53fa5424fa5a65f8939b075c11c033bd6157da">
ragout/main.py
</a>
</li>
<li class="file-stats">
<a href="#0962236166074c12abc702b2547817c732ca8125">
ragout/newick/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#16007c1586e67a2d7827c605c39e9b25ebc17633">
ragout/newick/lexer.py
</a>
</li>
<li class="file-stats">
<a href="#75366e2ad1b0b07c96985a2715665b90b030ad80">
<span class="deleted-file">
−
ragout/newick/lexertest.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#d8b0debe105fe22902c460da68776a76fb6aa9ca">
ragout/newick/parser.py
</a>
</li>
<li class="file-stats">
<a href="#e5e7290f35103f7af92405c945ff8cf1d0998a35">
<span class="deleted-file">
−
ragout/newick/parsertest.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#76954acb33d6c3f754ec3c0f3ed41a7b46a1f6d4">
ragout/newick/tokens.py
</a>
</li>
<li class="file-stats">
<a href="#bba476d0deb25893e8786c267042e8306bba1511">
ragout/newick/tree.py
</a>
</li>
<li class="file-stats">
<a href="#b415bd3b8446ea7b3157d05ceb7b5ceb3b652427">
<span class="deleted-file">
−
ragout/newick/treetest.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#80f92307b4458cf6145fe1e890b614cf6f3c621b">
ragout/overlap/overlap.py
</a>
</li>
<li class="file-stats">
<a href="#bbae960512e554902b41ac914feff3762dead7f1">
ragout/parsers/fasta_parser.py
</a>
</li>
<li class="file-stats">
<a href="#56c8e8437d7cbcc4f1b56ff842d0bcca572432ee">
ragout/parsers/phylogeny_parser.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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