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GitLab

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<h3>

Andreas Tille pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/279269cf173ff403470289d94d9e0125713e35be">279269cf</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2020-03-20T19:26:19+01:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.9.31</pre>

</li>

</ul>

<h4>30 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">

CMakeLists.txt

</a>

</li>

<li class="file-stats">

<a href="#ba308c53c268704c3008f5e2e6e8129f9f6bf3fe">

src/ChangeLog

</a>

</li>

<li class="file-stats">

<a href="#f76380e3e66f9453de89e5ac198478544cf1e6e4">

src/align/align.cpp

</a>

</li>

<li class="file-stats">

<a href="#f1fae2471d3aa9a609a9966be5b7ab4c0f58fa75">

src/align/align.h

</a>

</li>

<li class="file-stats">

<a href="#8310f6d8c536d182ebd128c5e462f7c6addcbf6d">

src/align/culling.cpp

</a>

</li>

<li class="file-stats">

<a href="#5a2381540b8362260dcaa6747086bb358097256e">

src/align/extend.cpp

</a>

</li>

<li class="file-stats">

<a href="#52ecbb45dea21619756b1951b32ef00fa81a1d54">

src/align/extend.h

</a>

</li>

<li class="file-stats">

<a href="#60c8f024f9cd9c232531c7af894abe05fbc10179">

src/align/extend_ungapped.h

</a>

</li>

<li class="file-stats">

<a href="#98a808eabbbc11da533eb019b5faf5950c4104ba">

src/align/gapped.cpp

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</li>

<li class="file-stats">

<a href="#8f9453cefaa66bad075c8bcb49a08b740b24e222">

src/align/legacy/banded_swipe_pipeline.cpp

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<li class="file-stats">

<a href="#afc8a5848004e8a30f2870d99353939852aa513c">

<span class="deleted-file">

−

src/align/legacy/greedy_pipeline.cpp

</span>

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</li>

<li class="file-stats">

<a href="#79b081d050ff058cc4444df01970041d95b03792">

src/align/legacy/query_mapper.cpp

</a>

</li>

<li class="file-stats">

<a href="#28524a0ac5e69e8f46d523d7d08fb7bec288edf3">

src/align/legacy/query_mapper.h

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</li>

<li class="file-stats">

<a href="#84d656034746137b8c6b0226ff878a5b99cc6bb3">

src/align/output.cpp

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<li class="file-stats">

<a href="#6d09ff6bcfac65c792218c53e21ca1a9e62a26ba">

src/align/target.h

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</li>

<li class="file-stats">

<a href="#f8990446cab751baed0b8c7fc38171e7d68cb1f7">

src/align/ungapped.cpp

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</li>

<li class="file-stats">

<a href="#76d5a97c09cca591280144de40f9c04a5ec57ef7">

src/basic/basic.cpp

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<li class="file-stats">

<a href="#fe8c534c15ea9cf93547993244c3ab903c4895ff">

src/basic/config.cpp

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</li>

<li class="file-stats">

<a href="#79a175a8b141cc4f06683108fcd39b79a555f1cd">

src/basic/config.h

</a>

</li>

<li class="file-stats">

<a href="#da280a51d91809345347036c4e31920b2c744ab7">

src/basic/const.h

</a>

</li>

<li class="file-stats">

<a href="#67a4682d5d2875c1c9fd5d4af1462dad844cba29">

src/basic/diagonal_segment.h

</a>

</li>

<li class="file-stats">

<a href="#80dc9ea59410b77519d86244d5b42337fb185f2f">

src/basic/hssp.cpp

</a>

</li>

<li class="file-stats">

<a href="#992408bab41b605763e629e7a719178aef609bae">

src/basic/masking.cpp

</a>

</li>

<li class="file-stats">

<a href="#f9492756ecc3a6486c8d8a74972ab3c60ae604a2">

src/basic/match.h

</a>

</li>

<li class="file-stats">

<a href="#50c272ac1f659a1884207c133e33be194399711b">

<span class="new-file">

+

src/basic/matrix_tables.cpp

</span>

</a>

</li>

<li class="file-stats">

<a href="#3acb533977ddcbc123b4fc5fa6a1f7d171564189">

src/basic/reduction.h

</a>

</li>

<li class="file-stats">

<a href="#c37d770cc180a4c51d177941b1090e906642b4fe">

src/basic/score_matrix.cpp

</a>

</li>

<li class="file-stats">

<a href="#15796a835f775e458ca2e977883e5a15f7eb14ae">

src/basic/score_matrix.h

</a>

</li>

<li class="file-stats">

<a href="#689ab503b8a95eba671e19a8c7ce2bc890fbc058">

src/basic/seed_iterator.h

</a>

</li>

<li class="file-stats">

<a href="#9cdd6e619760f59a971d25b80727732f834f4813">

src/basic/sequence.h

</a>

</li>

</ul>

<h5>The diff was not included because it is too large.</h5>

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