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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/134775f49d9aaba84cffc48f4b03d695be298067">134775f4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-20T01:44:35+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/134775f49d9aaba84cffc48f4b03d695be298067#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Thu, 19 Mar 2020 13</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Fri, 20 Mar 2020 01</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------</span>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/134775f49d9aaba84cffc48f4b03d695be298067#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Thu, 19 Mar 2020 13</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Fri, 20 Mar 2020 01</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+------------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -153,7 +153,6 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000</td>
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<td class="diff-line-num new_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
153
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> gentle | 732691 | normal | Pressing "alignment or Ctrl+G" only results in a dialog with a cancel button</span>
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<td class="diff-line-num old_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> ghmm | 936609 | normal | ghmm: Python2 removal in sid/bullseye</span>
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<td class="diff-line-num old_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> harvest-tools | 943055 | normal | harvest-tools: Python2 removal in sid/bullseye</span>
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<td class="diff-line-num old old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="plaintext"> hinge | 952615 | serious | hinge: FTBFS: fmt.h:22:10: fatal error: spdlog/fmt/bundled/core.h: No such file or directory</span>
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<td class="diff-line-num old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> htsjdk | 877590 | normal | FTBFS: error: package org.testng does not exist</span>
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<td class="diff-line-num old_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> htsjdk | 920588 | normal | htsjdk: Autopkgtest for htsjdk</span>
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<td class="diff-line-num old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> htslib | 922860 | normal | Packages do not contain the upstream README file</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -172,6 +171,7 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> khmer | 851830 | minor | arm64 has flaky tests</span>
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<td class="diff-line-num old_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> kineticstools | 936797 | serious | kineticstools: Python2 removal in sid/bullseye</span>
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<td class="diff-line-num old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> kissplice | 936798 | normal | kissplice: Python2 removal in sid/bullseye</span>
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<td class="diff-line-num new old_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> kmc | 954270 | important | kmc: arm64 autopkgtest time out</span>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> kmer | 936802 | normal | kmer: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> lambda-align2 | 953081 | grave | lambda-align2: empty package on !amd64</span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> libgtextutils | 925745 | serious | libgtextutils: ftbfs with GCC-9</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -229,6 +229,7 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> psychopy | 829424 | normal | psychopy: ioHub uses inappropriate PID file location</span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> psychopy | 953052 | important | psychopy: python2 dependencies</span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> psychopy | 953053 | important | psychopy: missing python3 dependencies</span>
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="plaintext"> pybel | 954253 | serious | python3-pybel: Missing dependency on unpackaged bel_resources</span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> pynast | 937488 | normal | pynast: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> pynast | 948081 | serious | pynast build depends on and recommends the removed blast2 transitional package</span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> python-biom-format | 820060 | normal | python-biom-format: broken on big-endian architectures</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -258,6 +259,7 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="plaintext"> sambamba | 948919 | serious | sambamba FTBFS: undefined reference to 'cram_to_bam'</span>
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="plaintext"> seqan2 | 892222 | normal | seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta</span>
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="plaintext"> seqan2 | 917851 | important | seqan2 2.4.0+dfsg-9: FTBFS, alignment problem</span>
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="plaintext"> simka | 954273 | important | simka: arm64 autopkgtest time out</span>
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> simpleitk | 949355 | serious | simpleitk FTBFS: test failures</span>
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="plaintext"> skesa | 952627 | serious | skesa: FTBFS: ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `vdb_mbedtls_entropy_init'</span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"> snakemake | 943956 | wishlist | snakemake: please make the build reproducible</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -273,6 +275,7 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> sra-sdk | 943231 | normal | sra-sdk: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"> sra-sdk | 952623 | serious | sra-sdk: FTBFS: ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `vdb_mbedtls_entropy_init'</span>
</pre>
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="plaintext"> sumaclust | 952093 | serious | sumaclust: FTBFS: mtcompare_sumaclust.c:18:10: fatal error: libfasta/sequence.h: No such file or directory</span>
</pre>
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="plaintext"> sumaclust | 954262 | serious | src:sumaclust: fails to migrate to testing for too long</span>
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="plaintext"> tree-puzzle | 806214 | normal | tree-puzzle: Package fails test suite</span>
</pre>
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="plaintext"> tree-puzzle | 890790 | minor | tree-puzzle: Please provide autopkgtest</span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="plaintext"> tree-puzzle | 951984 | serious | tree-puzzle: FTBFS: mpi.h:322:57: error: static assertion failed: "MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead."</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -283,5 +286,5 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation</span>
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<td class="diff-line-num old_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext"> xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"</span>
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<td class="diff-line-num old_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="plaintext"> xmedcon | 924017 | normal | desktop entry</span>
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="plaintext">(<span class="idiff left right">198</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext">(<span class="idiff left right">201</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="plaintext"></span></pre>
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