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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/minimap2">Debian Med / minimap2</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/minimap2/-/commit/bed51e20f2b105e714de458d6559e72478e55d25">bed51e20</a></strong>
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<span>by Steffen Moeller</span>
<i>at 2020-03-22T01:08:03+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New binary comes with improved d/copyright
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/minimap2/-/commit/bed51e20f2b105e714de458d6559e72478e55d25#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">minimap2 (2.17+dfsg-5) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">minimap2 (2.17+dfsg-6) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Stripping again, but manually invoking ranlib</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * In reaction to the FTPmaster's rejection notice</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> - added copyright referenced in .tex</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> - added current copyright holder (Dana Farber Institute)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Sun, 22 Mar 2020 00:52:34 +0100</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">minimap2 (2.17+dfsg-5) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Team upload</span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Not stripping the .a file with Debian</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,14 +16,14 @@ minimap2 (2.17+dfsg-5) unstable; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Sun, 15 Mar 2020 01:24:40 +0100</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">minimap2 (2.17+dfsg-4) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">minimap2 (2.17+dfsg-4) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> * Added include files</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Sat, 14 Mar 2020 23:46:18 +0100</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">minimap2 (2.17+dfsg-3) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">minimap2 (2.17+dfsg-3) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> * Created -dev package</span>
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<a href="https://salsa.debian.org/med-team/minimap2/-/commit/bed51e20f2b105e714de458d6559e72478e55d25#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,14 @@ Source: https://github.com/lh3/minimap2</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Files-Excluded: */natbib.*</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Copyright: © 2017-2018 Broad Institute <hengli@broadinstitute.org></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Copyright: © 2018- Dana-Farber Cancer Institute</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> 2017-2018 Broad Institute <hengli@broadinstitute.org></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Files: tex/bioinfo.cls</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">Copyright: © 2018- Dana-Farber Cancer Institute</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> © 2017-2018 Broad Institute <hengli@broadinstitute.org></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> © 2000 Part of code borrowed from Peter Wilson and Donald Arseneau</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Files: misc.c</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -41,6 +48,7 @@ License: MIT</td>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext">Files: debian/*</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext">Copyright: © 2018 Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> 2020 Steffen Moeller <moeller@debian.org></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext">License: MIT</span>
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<a href="https://salsa.debian.org/med-team/minimap2/-/commit/bed51e20f2b105e714de458d6559e72478e55d25#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,6 +6,8 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all</td>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">include /usr/share/dpkg/architecture.mk</span>
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">export DEB_CFLAGS_MAINT_APPEND += -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">RANLIB ?= ranlib</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,7 +39,8 @@ override_dh_compress:</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"># No idea why, but the stipping ruined the index of the .a file as spotted by nanopolish</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"># as its reverse dependency</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext">override_dh_strip:</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> dh_strip -Xlibminimap2.a</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> dh_strip</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> $(RANLIB) $(CURDIR)/debian/libminimap2-dev/usr/lib/libminimap2.a</span>
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41
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> dh_auto_clean</span>
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