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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-bcbio-gff">Debian Med / python-bcbio-gff</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/commit/6d425887f3aa544c9a71f9a77610836013b473e8">6d425887</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-23T14:53:27+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Copyright, minor packaging issues
</pre>
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
<span class="new-file">
+
debian/docs
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</a>
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/commit/6d425887f3aa544c9a71f9a77610836013b473e8#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,12 +16,13 @@ Homepage: https://github.com/chapmanb/bcbb/tree/master/gff</td>
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Package: python3-bcbio-gff</span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Section: python</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Depends: ${python3:Depends},</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> python3-biopython,</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> python3-six</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Description: Python3 library to read and write Generic Feature Format</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> A <span class="idiff left right">p</span>ython library to read and write Generic Feature Format (GFF).</span>
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<td class="diff-line-num new new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> A <span class="idiff left right">P</span>ython library to read and write Generic Feature Format (GFF).</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> .</span>
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<td class="diff-line-num new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> Generic Feature Format (GFF) is a biological sequence file format for</span>
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<td class="diff-line-num new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> representing features and annotations on sequences. It is a tab</span>
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<br>
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<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/python-bcbio-gff/-/commit/6d425887f3aa544c9a71f9a77610836013b473e8#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: python-bcbio-gff</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Source: <path_to_download></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">Comment: **** Before manually editing this file you should give ****</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> scan-copyrights</span>
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<td class="diff-line-num old old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> **** available in cme + lib-config-model-dpkg-perl ****</span>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> **** package a try. For existing copyright files try ****</span>
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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> cme update dpkg-copyright</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Source: https://pypi.org/project/bcbio-gff</span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Copyright: 20<span class="idiff left right">xx-20yy <upstrea</span>m></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">License: <span class="idiff left right"><license></span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Copyright: 20<span class="idiff left right">16-2020 Brad Chapman <chapmanb@50mail.co</span>m></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">License: <span class="idiff left right">BioPython</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Files: debian/*</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Copyright: 2020 Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">License: <license></span></pre>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">License: BioPython</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">License: BioPython</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Biopython License Agreement</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> Permission to use, copy, modify, and distribute this software and its</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> documentation with or without modifications and for any purpose and</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> without fee is hereby granted, provided that any copyright notices</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> appear in all copies and that both those copyright notices and this</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> permission notice appear in supporting documentation, and that the</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> names of the contributors or copyright holders not be used in</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> advertising or publicity pertaining to distribution of the software</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> without specific prior permission.</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> OR PERFORMANCE OF THIS SOFTWARE.</span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">README*</span></pre>
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