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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d3b3c57523f6d1fca4ab6d7dfcef002a84f939d4">d3b3c575</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-23T01:45:14+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d3b3c57523f6d1fca4ab6d7dfcef002a84f939d4#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Sun, 22 Mar 2020 13:42:03</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Mon, 23 Mar 2020 01:42:44</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------</span>
</pre>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d3b3c57523f6d1fca4ab6d7dfcef002a84f939d4#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Sun, 22 Mar 2020 13:42:03</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Mon, 23 Mar 2020 01:42:45</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -62,8 +62,8 @@ Last-Update: Sun, 22 Mar 2020 13:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext">(57 rows)</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> source | id | severity | <span class="idiff left right">title</span> </span>
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<td class="diff-line-num old old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext">-------------------------------+--------+-----------+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------</span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> source | id | severity | <span class="idiff left right"> title </span> </span>
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<td class="diff-line-num new old_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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66
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext">-------------------------------+--------+-----------+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------<span class="idiff left right">--------</span></span>
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67
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> abyss | 920282 | important | abyss fails to build on hurd - googletest EXPECT_DEATH</span>
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68
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68
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> amide | 901677 | normal | amide: Window is too wide and not resizable</span>
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69
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69
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> arb | 916406 | important | libarb-dev: Missing symbols in static libraries</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -81,9 +81,12 @@ Last-Update: Sun, 22 Mar 2020 13:42:03 +0000</td>
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> biojava4-live | 843712 | normal | biojava4-live: FTBFS (failing tests)</span>
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<td class="diff-line-num old_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> biojava-live | 659824 | minor | biojava-live: New version available</span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> biomaj3 | 950914 | minor | python3-biomaj3: Depends on python-influxdb wich ftbs, patch to remove dependency</span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> bioperl-run | 954511 | serious | bioperl-run: FTBFS: dh_auto_test: error: perl Build test --verbose 1 returned exit code 255</span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> bwa | 942447 | normal | Build bwa on ppc64el</span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> camp | 900181 | normal | camp: FTBFS on 32bit big endian: check metaclass->function("f4").call(object, camp::Args(1, 4, 15)).to<unsigned long>() == 20 has failed</span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> clonalorigin | 884475 | wishlist | clonalorigin: FTBFS on alpha: tests time out</span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> cwltool | 954496 | serious | cwltool: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.7 3.8" returned exit code 13</span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> cyvcf2 | 954603 | serious | cyvcf2: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.7 3.8" returned exit code 13</span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> dawg | 903886 | important | dawg: Test suite fails</span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> dcmtk | 637687 | wishlist | libdcmtk2-dev: Dcmtk headers cause compile failure</span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> dcmtk | 675448 | important | dcmtk: dcmdjpeg does not set (0028, 2114) LossyImageCompressionMethod when decompressing lossy compressed DICOM file</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -211,6 +214,7 @@ Last-Update: Sun, 22 Mar 2020 13:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> pynast | 937488 | normal | pynast: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> pynast | 948081 | serious | pynast build depends on and recommends the removed blast2 transitional package</span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> pynn | 813821 | serious | pynn: FTBFS: TypeError: 'float' object cannot be interpreted as an index</span>
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext"> pyqi | 954500 | serious | pyqi: FTBFS: dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2</span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> python-biom-format | 820060 | normal | python-biom-format: broken on big-endian architectures</span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> python-biom-format | 950929 | normal | python-biom-format: FTBFS with pandas 1.0: test failures</span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> python-cogent | 950474 | important | python-cogent FTBFS on armel and i386: test failures</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -222,6 +226,7 @@ Last-Update: Sun, 22 Mar 2020 13:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> python-pysam | 938092 | normal | python-pysam: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> python-ruffus | 841073 | wishlist | python-ruffus: Needs 18 GB of RAM to build</span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> python-tinyalign | 952603 | normal | python-tinyalign: license of buildwheels.sh is CC0</span>
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext"> q2cli | 954601 | serious | q2cli: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.8 -s custom "--test-args=cd {build_dir}; HOME=/<<PKGBUILDDIR>> QIIMETEST= nosetests3" returned exit code 13</span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> q2-demux | 950933 | normal | q2-demux: FTBFS with pandas 1.0: test failures</span>
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231
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> q2templates | 950931 | normal | q2templates: FTBFS with pandas 1.0: test failures</span>
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227
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232
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> q2-types | 950932 | normal | q2-types: FTBFS with pandas 1.0: test failures</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -238,6 +243,8 @@ Last-Update: Sun, 22 Mar 2020 13:42:03 +0000</td>
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243
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> sambamba | 948919 | serious | sambamba FTBFS: undefined reference to 'cram_to_bam'</span>
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239
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> seqan2 | 892222 | normal | seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta</span>
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240
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245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> seqan2 | 917851 | important | seqan2 2.4.0+dfsg-9: FTBFS, alignment problem</span>
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246
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="plaintext"> seqan3 | 954589 | serious | seqan3: FTBFS: two_dimensional_matrix_test.cpp:43:15: error: invalid type ‘__vector(1) int’ as initializer for a vector of type ‘const __vector(1) int’</span>
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247
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="plaintext"> sight | 954711 | wishlist | FTBFS with Boost 1.71</span>
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241
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> simka | 954273 | important | simka: arm64 autopkgtest time out</span>
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> simpleitk | 949355 | serious | simpleitk FTBFS: test failures</span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> skesa | 952627 | serious | skesa: FTBFS: ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `vdb_mbedtls_entropy_init'</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -265,5 +272,5 @@ Last-Update: Sun, 22 Mar 2020 13:42:03 +0000</td>
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272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="plaintext"> xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation</span>
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"</span>
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"> xmedcon | 924017 | normal | desktop entry</span>
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="plaintext">(20<span class="idiff left right">1</span> rows)</span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext">(20<span class="idiff left right">8</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"></span></pre>
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