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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/chip-seq">Debian Med / chip-seq</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/chip-seq/-/commit/4f62cf970de4d87030a031a4b2f739fa9b420012">4f62cf97</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-24T19:48:57+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix linker flags
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/chip-seq/-/commit/5934d18d1ef0c9298cc9e9d77caccbab0b9d9e2e">5934d18d</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-03-24T20:03:26+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix installation
</pre>
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<h4>4 changed files:</h4>
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<a href="#68e0b13744e158347bfd74ebaaca667435f07d14">
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debian/manpages
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<a href="#af5e13ec7db0b92fee10569b5904cd0fb8b966a6">
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debian/patches/fix_install.patch
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<a href="#fbe12dd5e5a591bc7b1724b3029989fe99ffbf1a">
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debian/patches/fix_linker.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
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debian/patches/series
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<h4>Changes:</h4>
<li id="68e0b13744e158347bfd74ebaaca667435f07d14">
<a href="https://salsa.debian.org/med-team/chip-seq/-/compare/41c8225accb3fcb9d7d599536c8f61191509193e...5934d18d1ef0c9298cc9e9d77caccbab0b9d9e2e#68e0b13744e158347bfd74ebaaca667435f07d14"><strong>debian/manpages</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">*1.gz</span></pre>
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<li id="af5e13ec7db0b92fee10569b5904cd0fb8b966a6">
<a href="https://salsa.debian.org/med-team/chip-seq/-/compare/41c8225accb3fcb9d7d599536c8f61191509193e...5934d18d1ef0c9298cc9e9d77caccbab0b9d9e2e#af5e13ec7db0b92fee10569b5904cd0fb8b966a6"><strong>debian/patches/fix_install.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Mon, 23 Mar 2020 20:55:38 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Fix install dir</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/Makefile</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -10,7 +10,7 @@</span> LDFLAGS += -O3 -std=gnu99 -fPIC -lm</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> #binDir = $(PWD)/bin</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> #manDir = /usr/share/man/man1/</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> ifeq ($(prefix),)</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- prefix := $(DESTDIR).</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ prefix := $(DESTDIR)</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> endif</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> binDir = $(prefix)/bin</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> datDir = $(prefix)/share/chip-seq</span></pre>
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<li id="fbe12dd5e5a591bc7b1724b3029989fe99ffbf1a">
<a href="https://salsa.debian.org/med-team/chip-seq/-/compare/41c8225accb3fcb9d7d599536c8f61191509193e...5934d18d1ef0c9298cc9e9d77caccbab0b9d9e2e#fbe12dd5e5a591bc7b1724b3029989fe99ffbf1a"><strong>debian/patches/fix_linker.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Mon, 23 Mar 2020 20:55:38 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Fix linker flags</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/Makefile</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -3,7 +3,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> #</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> CC = gcc</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> CFLAGS = -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-LDFLAGS = -O3 -std=gnu99 -fPIC -lm</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LDFLAGS += -O3 -std=gnu99 -fPIC -lm</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> #CFLAGS = -O3 -std=gnu99 -W -pedantic</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> #LDFLAGS = -O3 -std=gnu99 -fPIC -lm</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="p">@@ -77,16 +77,16 @@</span> tools/filter_counts : $(FILTER_COUNTS_SR</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> $(CC) $(CFLAGS) -o tools/filter_counts $^</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> tools/bed2bed_display : $(BED2BED_DISPLAY_SRC) $(OBJS)</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CC) $(LDFLAGS) -o tools/bed2bed_display $^</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) -o tools/bed2bed_display $^ $(LDFLAGS)</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> tools/bed2sga : $(BED2SGA_SRC) $(OBJS)</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CC) $(LDFLAGS) -o tools/bed2sga $^</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) -o tools/bed2sga $^ $(LDFLAGS)</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> </span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> tools/sga2bed : $(SGA2BED_SRC) $(OBJS)</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CC) $(LDFLAGS) -o tools/sga2bed $^</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) -o tools/sga2bed $^ $(LDFLAGS)</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> tools/sga2wig : $(SGA2WIG_SRC) $(OBJS)</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CC) $(LDFLAGS) -o tools/sga2wig $^</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) -o tools/sga2wig $^ $(LDFLAGS)</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> install: install-bin</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> </span></pre>
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<a href="https://salsa.debian.org/med-team/chip-seq/-/compare/41c8225accb3fcb9d7d599536c8f61191509193e...5934d18d1ef0c9298cc9e9d77caccbab0b9d9e2e#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">fix_linker.patch</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">fix_install.patch</span></pre>
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