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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/minimap2">Debian Med / minimap2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/minimap2/-/commit/784c96d427988cfba8235a63af94f070f88ae7c1">784c96d4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-25T15:07:42+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge changelog entries of several never released package versions to know what exactly was changed from one release to another
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/minimap2/-/commit/8dc2ecdd3df45ec77516c539961896ae1dafb6d1">8dc2ecdd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-25T15:08:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/minimap2/-/commit/56b6934d5795406c9235eeca27704fa034209e78">56b6934d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-25T15:08:18+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Trim trailing whitespace.
Fixes: lintian: file-contains-trailing-whitespace
See-also: https://lintian.debian.org/tags/file-contains-trailing-whitespace.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/minimap2/-/commit/270880931726746bd6b3975a5b626f6ba3ddfaf4">27088093</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-25T15:08:20+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Repository, Repository-Browse.</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/minimap2/-/commit/233a07800e247d7af384a2c31dec82a6dfe9def3">233a0780</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-25T15:17:06+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing DEP3 fields
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/minimap2/-/commit/be7448d7435e51944a951a584bf7e187e15be2a0">be7448d7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-25T15:19:26+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#8e5f8c498df3c5e717899d72b7c4ef9914754146">
debian/patches/addLTO.patch
</a>
</li>
<li class="file-stats">
<a href="#d4657693b4cbba1934a7abddc0a140b4505aebf7">
debian/patches/ar.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/minimap2/-/compare/bed51e20f2b105e714de458d6559e72478e55d25...be7448d7435e51944a951a584bf7e187e15be2a0#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">minimap2 (2.17+dfsg-6) unstable; urgency=medium</span>
</pre>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> * Team upload</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> * Stripping again, but manually invoking ranlib</span>
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<td class="diff-line-num old old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> * In reaction to the FTPmaster's rejection notice</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> - added copyright referenced in .tex</span>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> - added current copyright holder (Dana Farber Institute)</span>
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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Sun, 22 Mar 2020 00:52:34 +0100</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">minimap2 (2.17+dfsg-5) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> * Team upload</span>
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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> * Not stripping the .a file with Debian</span>
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<td class="diff-line-num old old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> * d/control: Added Rules-Requires-Root flag</span>
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<td class="diff-line-num new old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">minimap2 (2.17+dfsg-7) unstable; urgency=medium</span>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Sun, 15 Mar 2020 01:24:40 +0100</span>
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<td class="diff-line-num new old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Merge changelog entries of several never released package versions</span>
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<td class="diff-line-num new old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Trim trailing whitespace.</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Set upstream metadata fields: Repository, Repository-Browse.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Add missing DEP3 fields</span>
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18
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"><span class="idiff left right">minimap2 (2.17+dfsg-4) UNRELEASED; urgency=medium</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"><span class="idiff left right"> -- Andreas Tille <tille@debian.org> Wed, 25 Mar 2020 15:17:28 +0100</span></span>
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20
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> * Added include files</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Sat, 14 Mar 2020 23:46:18 +0100</span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext">minimap2 (2.17+dfsg-3) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">minimap2 (2.17+dfsg-6) unstable; urgency=medium</span>
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27
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Created -dev package</span>
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30
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> * Standards-Version: 4.5.0</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> * Added Link-Time-Optimization</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> * Added include files</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> * d/control: Added Rules-Requires-Root flag</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> * Manually invoking ranlib</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> * In reaction to the FTPmaster's rejection notice</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> - added copyright referenced in .tex</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> - added current copyright holder (Dana Farber Institute)</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> S<span class="idiff left right">at, 14 Mar 2020 22:45:4</span>4 +0100</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> S<span class="idiff left right">un, 22 Mar 2020 00:52:3</span>4 +0100</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">minimap2 (2.17+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"></span>
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<li id="8e5f8c498df3c5e717899d72b7c4ef9914754146">
<a href="https://salsa.debian.org/med-team/minimap2/-/compare/bed51e20f2b105e714de458d6559e72478e55d25...be7448d7435e51944a951a584bf7e187e15be2a0#8e5f8c498df3c5e717899d72b7c4ef9914754146"><strong>debian/patches/addLTO.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Steffen Moeller</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-03-14 23:04:54 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Add -flto flag</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">Index: minimap2/Makefile</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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3
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- minimap2.orig/Makefile</span></span>
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<li id="d4657693b4cbba1934a7abddc0a140b4505aebf7">
<a href="https://salsa.debian.org/med-team/minimap2/-/compare/bed51e20f2b105e714de458d6559e72478e55d25...be7448d7435e51944a951a584bf7e187e15be2a0#d4657693b4cbba1934a7abddc0a140b4505aebf7"><strong>debian/patches/ar.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Steffen Moeller</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-03-15 04:06:20 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Descriptio: Fix ar call to support debugging symbols properly</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">Index: minimap2/Makefile</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- minimap2.orig/Makefile</span></span>
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<a href="https://salsa.debian.org/med-team/minimap2/-/compare/bed51e20f2b105e714de458d6559e72478e55d25...be7448d7435e51944a951a584bf7e187e15be2a0#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -47,4 +47,3 @@ override_dh_auto_clean:</td>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> rm -f MT-human.mmi</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> rm -f tex/minimap2.aux tex/minimap2.bbl tex/minimap2.blg tex/minimap2.log tex/minimap2.out tex/minimap2.pdf</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> rm -f libminimap2.a</span></pre>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"></span></pre>
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<a href="https://salsa.debian.org/med-team/minimap2/-/compare/bed51e20f2b105e714de458d6559e72478e55d25...be7448d7435e51944a951a584bf7e187e15be2a0#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/minimap2/-/compare/bed51e20f2b105e714de458d6559e72478e55d25...be7448d7435e51944a951a584bf7e187e15be2a0#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,3 +19,5 @@ Registry:</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> Entry: minimap2</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Bug-Database: https://github.com/lh3/minimap2/issues</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Bug-Submit: https://github.com/lh3/minimap2/issues/new</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">Repository: https://github.com/lh3/minimap2.git</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">Repository-Browse: https://github.com/lh3/minimap2</span></pre>
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