<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/nanopolish">Debian Med / nanopolish</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/c99457450e229c51dee848625a7a8d8bf248f64f">c9945745</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-14T15:57:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.12.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/6abd19a165775c80e9bce0de2fb8c9652bd0f9c7">6abd19a1</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-14T15:57:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/d6fe0d12610d6456ee83b01e2bea5e43814476bf">d6fe0d12</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-14T15:58:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.12.1'
Update to upstream version '0.12.1'
with Debian dir b14e4b42365b26daba4d547581e9f6825213069b</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/6855172ea8334410f5ce4bce9976d1676baf1246">6855172e</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-14T15:58:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/785f71603e3e4af0eec899c1e894ac6e974dc0b5">785f7160</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-14T15:58:15+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/7e4fe7dc79736e75be6bb5a4ab6b5934e5c0f246">7e4fe7dc</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-14T15:58:15+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/67c1ab627d584f056670f8788cc9bd50c76c2a6f">67c1ab62</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-14T15:58:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Submit.</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/37e0748472d36e59397f8723134fa29f2ba9ce0b">37e07484</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-26T02:51:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream release, upgrade to minimap2
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
.gitmodules
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#7f520b38bd378efdbd9aeba08b09335af8ea9050">
<span class="new-file">
+
debian/patches/staticMinimap2Library.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#41660adec78594f229c01b0235788ce15e4799e4">
scripts/calculate_methylation_frequency.py
</a>
</li>
<li class="file-stats">
<a href="#084630baf4266f8ce63a4a492bf554e363d10a3a">
scripts/convert_model_to_header.py
</a>
</li>
<li class="file-stats">
<a href="#abe43a22de051f3238d00dd13059d5a975da0445">
<span class="new-file">
+
scripts/requirements.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#64bd4890dcb435b7eb59baa3df18cff64a3668b1">
src/alignment/nanopolish_alignment_db.cpp
</a>
</li>
<li class="file-stats">
<a href="#27cdbde31a028dd121ce6b952c1bfbe9c474fc60">
src/alignment/nanopolish_alignment_db.h
</a>
</li>
<li class="file-stats">
<a href="#9102a0c62af6ff12a6d54fae93a06ce123bf52aa">
src/common/nanopolish_common.cpp
</a>
</li>
<li class="file-stats">
<a href="#58a43c64ead5187f569b28ec5ca98b313c48d7c7">
src/common/nanopolish_common.h
</a>
</li>
<li class="file-stats">
<a href="#149ac5b0310ff017664f0645808befe6bda2ed83">
src/common/nanopolish_variant.cpp
</a>
</li>
<li class="file-stats">
<a href="#4a3bd46afccd807332313419aac1bc6ab15f7c83">
src/common/nanopolish_variant.h
</a>
</li>
<li class="file-stats">
<a href="#8a3865c98338f05d5d81e6ede1b90ea554551bdf">
src/common/progress.h
</a>
</li>
<li class="file-stats">
<a href="#82d5fa9393ca35677604395172ee50323b5c3a2f">
src/common/nanopolish_fast5_io.cpp
→
src/io/nanopolish_fast5_io.cpp
</a>
</li>
<li class="file-stats">
<a href="#28bcf67d78a9831cb0bf08e1c043914f214cd16d">
src/common/nanopolish_fast5_io.h
→
src/io/nanopolish_fast5_io.h
</a>
</li>
<li class="file-stats">
<a href="#dd987838388d2c42ef5e4897eaef047ea34a4426">
<span class="new-file">
+
src/io/nanopolish_fast5_loader.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#0cd6b73075b58ed0f1d99c985fdbc72126ff992f">
<span class="new-file">
+
src/io/nanopolish_fast5_loader.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#3b400bf860ced6dadb65b7b1833baeaf48afb438">
<span class="new-file">
+
src/io/nanopolish_fast5_processor.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#07c674abaa32ce983fafd6be33da2b558979ae3d">
<span class="new-file">
+
src/io/nanopolish_fast5_processor.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#125985123a25635dc9e1a81a7b2849a0f12aa286">
src/nanopolish_call_methylation.cpp
</a>
</li>
<li class="file-stats">
<a href="#8a0296d2996ee7f7e9f9e1e26227edce94fe1d66">
src/nanopolish_call_variants.cpp
</a>
</li>
<li class="file-stats">
<a href="#2d62e059707d17d6d88d86a4af4fce9c4c482e3d">
src/nanopolish_index.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777;">
—
<br>
<a href="https://salsa.debian.org/med-team/nanopolish/-/compare/14cc1848d6ae867c6ccae4355afec8402ec2f59f...37e0748472d36e59397f8723134fa29f2ba9ce0b">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>