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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/nanopolish">Debian Med / nanopolish</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanopolish/-/commit/c99457450e229c51dee848625a7a8d8bf248f64f">c9945745</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-14T15:57:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.12.1</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
.gitmodules
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#41660adec78594f229c01b0235788ce15e4799e4">
scripts/calculate_methylation_frequency.py
</a>
</li>
<li class="file-stats">
<a href="#084630baf4266f8ce63a4a492bf554e363d10a3a">
scripts/convert_model_to_header.py
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</li>
<li class="file-stats">
<a href="#abe43a22de051f3238d00dd13059d5a975da0445">
<span class="new-file">
+
scripts/requirements.txt
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</li>
<li class="file-stats">
<a href="#64bd4890dcb435b7eb59baa3df18cff64a3668b1">
src/alignment/nanopolish_alignment_db.cpp
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<li class="file-stats">
<a href="#27cdbde31a028dd121ce6b952c1bfbe9c474fc60">
src/alignment/nanopolish_alignment_db.h
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<li class="file-stats">
<a href="#9102a0c62af6ff12a6d54fae93a06ce123bf52aa">
src/common/nanopolish_common.cpp
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<li class="file-stats">
<a href="#58a43c64ead5187f569b28ec5ca98b313c48d7c7">
src/common/nanopolish_common.h
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<li class="file-stats">
<a href="#149ac5b0310ff017664f0645808befe6bda2ed83">
src/common/nanopolish_variant.cpp
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<li class="file-stats">
<a href="#4a3bd46afccd807332313419aac1bc6ab15f7c83">
src/common/nanopolish_variant.h
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<li class="file-stats">
<a href="#8a3865c98338f05d5d81e6ede1b90ea554551bdf">
src/common/progress.h
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<li class="file-stats">
<a href="#82d5fa9393ca35677604395172ee50323b5c3a2f">
src/common/nanopolish_fast5_io.cpp
→
src/io/nanopolish_fast5_io.cpp
</a>
</li>
<li class="file-stats">
<a href="#28bcf67d78a9831cb0bf08e1c043914f214cd16d">
src/common/nanopolish_fast5_io.h
→
src/io/nanopolish_fast5_io.h
</a>
</li>
<li class="file-stats">
<a href="#dd987838388d2c42ef5e4897eaef047ea34a4426">
<span class="new-file">
+
src/io/nanopolish_fast5_loader.cpp
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<li class="file-stats">
<a href="#0cd6b73075b58ed0f1d99c985fdbc72126ff992f">
<span class="new-file">
+
src/io/nanopolish_fast5_loader.h
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</a>
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<li class="file-stats">
<a href="#3b400bf860ced6dadb65b7b1833baeaf48afb438">
<span class="new-file">
+
src/io/nanopolish_fast5_processor.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#07c674abaa32ce983fafd6be33da2b558979ae3d">
<span class="new-file">
+
src/io/nanopolish_fast5_processor.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#125985123a25635dc9e1a81a7b2849a0f12aa286">
src/nanopolish_call_methylation.cpp
</a>
</li>
<li class="file-stats">
<a href="#8a0296d2996ee7f7e9f9e1e26227edce94fe1d66">
src/nanopolish_call_variants.cpp
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</li>
<li class="file-stats">
<a href="#2d62e059707d17d6d88d86a4af4fce9c4c482e3d">
src/nanopolish_index.cpp
</a>
</li>
<li class="file-stats">
<a href="#7c87ffe15195ab460f3be130ef4d8324408853f0">
src/nanopolish_read_db.cpp
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</li>
<li class="file-stats">
<a href="#56330d5566ccd748f6bc882374c02aa256d67d8a">
src/nanopolish_read_db.h
</a>
</li>
<li class="file-stats">
<a href="#244f2077b9e28a5e6394deda0b7574b0f80f501c">
src/nanopolish_squiggle_read.cpp
</a>
</li>
<li class="file-stats">
<a href="#0cd5a7898ca2515cf6be03b2013fef5dda71d2cd">
src/nanopolish_squiggle_read.h
</a>
</li>
<li class="file-stats">
<a href="#f7249fbd17a91933827d6b1d28073b9264d9a96a">
src/nanopolish_variant_db.cpp
</a>
</li>
<li class="file-stats">
<a href="#3c2491a165fd67e92c2320ee84643b5d26cf9388">
src/nanopolish_variant_db.h
</a>
</li>
<li class="file-stats">
<a href="#e64bacfc1e3288825a3be0196554063c9c3d1d9e">
src/test/nanopolish_test.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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