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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/biobambam2">Debian Med / biobambam2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/biobambam2/-/commit/b8e1ad2e14b8d3b5af38858fd51383a8944202d5">b8e1ad2e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-27T08:29:20+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biobambam2/-/commit/7f020721f51a7ae5a3927255801d83356b340278">7f020721</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-27T08:29:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.160+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biobambam2/-/commit/a4ed7c9024157f79f97cc9621570b0190a3531d4">a4ed7c90</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-27T08:29:22+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.0.160+ds'
Update to upstream version '2.0.160+ds'
with Debian dir ac89f15b9e7897b2a68d6d9cc0f9ef8d751eccc7</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biobambam2/-/commit/6cd73fec42ac4b5940f74a17cc958694e1aa6a99">6cd73fec</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-27T08:29:29+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biobambam2/-/commit/f5ac179f30e7156e8db5762c0693bbdc2f4142d3">f5ac179f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-27T08:29:29+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biobambam2/-/commit/0b676e01d685a7ffc0a4ecd6e7a72473e98a20e6">0b676e01</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-27T10:16:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bumped versioned Build-Depends: libmaus2-dev (>= 2.0.713)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biobambam2/-/commit/565373b5d1ead2f045943e270d479ad8366dd310">565373b5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-27T10:49:15+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>27 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#677fbeb920da8ef90437597964b8608b5153cb72">
src/biobambam2/DepthInterval.cpp
</a>
</li>
<li class="file-stats">
<a href="#b68c67d13c3215c9bb9f6b13f073e44307644dd6">
src/biobambam2/DepthInterval.hpp
</a>
</li>
<li class="file-stats">
<a href="#3246c107ecd8bac08d2aad7cede823b6e17e7d48">
<span class="new-file">
+
src/biobambam2/DepthIntervalGetter.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#9f34177e22d1a42ed848da74576ef26cd611601f">
src/programs/bamadapterfind.cpp
</a>
</li>
<li class="file-stats">
<a href="#3b06d7c0df977f4386ad9e6694957bfbc058149f">
src/programs/bamauxmerge2.cpp
</a>
</li>
<li class="file-stats">
<a href="#f9f9c77c459bb9d5a5063ec06c9ae07ef19dd14e">
src/programs/bamcat.cpp
</a>
</li>
<li class="file-stats">
<a href="#5393ade310e7cd11929979d7b18ab8cc6860e027">
src/programs/bamcollate2.cpp
</a>
</li>
<li class="file-stats">
<a href="#731c8a82cbe64a38ffc549ef39ae18a3c5470e9a">
src/programs/bamconsensus.cpp
</a>
</li>
<li class="file-stats">
<a href="#d3cd3680c6e1021f4c62d470fb446a0af0690596">
src/programs/bamdepth.cpp
</a>
</li>
<li class="file-stats">
<a href="#2eda945bee66db54d703c5e141683d60651982a6">
<span class="new-file">
+
src/programs/bamdepthmerge.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#c9c0c569019a22274ccc2bccf676f97a81067000">
<span class="new-file">
+
src/programs/bamexondepth.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#e15d60f31a4cd0cd24c8991d7bb71272ff213a0a">
<span class="new-file">
+
src/programs/bamexploderg.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#309ee1cabd82915dbfa35666ebc065bfb115dbac">
src/programs/bamfeaturecount.cpp
</a>
</li>
<li class="file-stats">
<a href="#33cd4f96ef6a49234ca94641b1179f3a59edaee2">
<span class="new-file">
+
src/programs/bamfilterbyname.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#3c21d4f4271aa72150bb239607e94f67019d87d0">
src/programs/bamfilterheader2.cpp
</a>
</li>
<li class="file-stats">
<a href="#e93f9c24a73ce21224df4ba024020a2a6a524dc2">
src/programs/bamfixpairinfo.cpp
</a>
</li>
<li class="file-stats">
<a href="#73f6330c0208bc31426f562eae6fd2487e96bdb5">
<span class="new-file">
+
src/programs/bamheadercat.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#d6a190d38fb46638958ed2caaf244a54f771eec6">
src/programs/bamheap2.cpp
</a>
</li>
<li class="file-stats">
<a href="#7ca6681395cded3507112e4aefbb3b9fb50b105a">
src/programs/bamheap3.cpp
</a>
</li>
<li class="file-stats">
<a href="#fa4d49e95b87fe5c8c296e79810731ff312813f3">
src/programs/bammarkduplicatesopt.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777;">
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