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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cf976ab6233bafbb2fcbca6c4ef6c30a29e8f16b">cf976ab6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-27T01:45:02+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cf976ab6233bafbb2fcbca6c4ef6c30a29e8f16b#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Thu, 26 Mar 2020 13:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Fri, 27 Mar 2020 01:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/cf976ab6233bafbb2fcbca6c4ef6c30a29e8f16b#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Thu, 26 Mar 2020 13:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Fri, 27 Mar 2020 01:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -131,6 +131,7 @@ Last-Update: Thu, 26 Mar 2020 13:42:04 +0000</td>
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<td class="diff-line-num new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> gemma | 952190 | serious | gemma: FTBFS: dh_auto_test: error: make -j1 check returned exit code 2</span>
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<td class="diff-line-num old_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> gentle | 732691 | normal | Pressing "alignment or Ctrl+G" only results in a dialog with a cancel button</span>
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<td class="diff-line-num old_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> ghmm | 936609 | normal | ghmm: Python2 removal in sid/bullseye</span>
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<td class="diff-line-num new old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> gubbins | 955006 | serious | src:gubbins: fails to migrate to testing for too long: ftbfs on i386</span>
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<td class="diff-line-num new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> harvest-tools | 943055 | normal | harvest-tools: Python2 removal in sid/bullseye</span>
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<td class="diff-line-num new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> htsjdk | 877590 | normal | FTBFS: error: package org.testng does not exist</span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> htsjdk | 920588 | normal | htsjdk: Autopkgtest for htsjdk</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -176,6 +177,8 @@ Last-Update: Thu, 26 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> mypy | 952757 | minor | mypy(1): build errors in man page</span>
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<td class="diff-line-num old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> ncbi-blast+ | 891197 | normal | Please switch to pcre2</span>
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<td class="diff-line-num old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> ncbi-tools6 | 225651 | wishlist | ncbi-tools-x11: want Cn3D++</span>
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<td class="diff-line-num new old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"> ncbi-vdb | 952627 | serious | libncbi-vdb2 uses undefined symbols</span>
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"> ncbi-vdb | 953897 | serious | libncbi-vdb2 uses undefined symbols</span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> nibabel | 868229 | normal | NotImplementedError: Pixel Data is compressed in a format pydicom does not yet handle. Cannot return array</span>
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> nut-nutrition | 339838 | wishlist | nut-nutrition: Would like to record 'snacks' and change the number of meals</span>
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> obitools | 935340 | normal | obitools: Port to Python3 needed</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -240,11 +243,9 @@ Last-Update: Thu, 26 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> sambamba | 948919 | serious | sambamba FTBFS: undefined reference to 'cram_to_bam'</span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> seqan2 | 892222 | normal | seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta</span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> seqan2 | 917851 | important | seqan2 2.4.0+dfsg-9: FTBFS, alignment problem</span>
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<pre style="margin: 0;">-<span id="LC243" class="line" lang="plaintext"> seqan3 | 954589 | serious | seqan3: FTBFS: two_dimensional_matrix_test.cpp:43:15: error: invalid type ‘__vector(1) int’ as initializer for a vector of type ‘const __vector(1) int’</span>
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246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> sight | 954711 | wishlist | FTBFS with Boost 1.71</span>
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247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> simka | 954273 | important | simka: arm64 autopkgtest time out</span>
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> simpleitk | 949355 | serious | simpleitk FTBFS: test failures</span>
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247
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<pre style="margin: 0;">-<span id="LC247" class="line" lang="plaintext"> skesa | 952627 | serious | skesa: FTBFS: ld: /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `vdb_mbedtls_entropy_init'</span>
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> snakemake | 943956 | wishlist | snakemake: please make the build reproducible</span>
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249
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> snap | 927011 | minor | snap: Package info contains a 404 url</span>
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> snap-aligner | 848589 | normal | snap-aligner: Build requires 188 GB of memory (fortunately not used, just allocated)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -269,5 +270,5 @@ Last-Update: Thu, 26 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="plaintext"> xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation</span>
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="plaintext"> xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"</span>
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="plaintext"> xmedcon | 924017 | normal | desktop entry</span>
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="plaintext">(20<span class="idiff left right">4</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext">(20<span class="idiff left right">5</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"></span></pre>
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