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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f425c744f494b62783b8f1430c98b7e56be37698">f425c744</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-28T01:44:52+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f425c744f494b62783b8f1430c98b7e56be37698#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Fri, 27 Mar 2020 13</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Sat, 28 Mar 2020 01</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f425c744f494b62783b8f1430c98b7e56be37698#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Fri, 27 Mar 2020 13</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Sat, 28 Mar 2020 01</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00</span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> beagle | 5.1-191125 | 200324 | Dylan Aïssi | Dylan Aïssi | 2019-12-14 18:34:10+00</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> biobambam2 | 2.0.1<span class="idiff left right">53 | 2.0.159+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41</span>+00</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> biobambam2 | 2.0.1<span class="idiff left right">60 | 2.0.160+ds | Andreas Tille | Andreas Tille | 2020-03-27 10:34:45</span>+00</span>
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10
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,7 +15,6 @@ Last-Update: Fri, 27 Mar 2020 13:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> diamond-aligner | 0.9.30 | 0.9.31 | Andreas Tille | Michael R. Crusoe | 2020-02-17 13:34:16+00</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,6 +29,7 @@ Last-Update: Fri, 27 Mar 2020 13:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200318.6fef1b7 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> libmaus2 | 2.0.713 | 2.0.714 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -60,7 +59,7 @@ Last-Update: Fri, 27 Mar 2020 13:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext">(5<span class="idiff left right">8</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext">(5<span class="idiff left right">7</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> source | id | severity | title </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -180,6 +179,7 @@ Last-Update: Fri, 27 Mar 2020 13:42:03 +0000</td>
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180
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> ncbi-vdb | 952627 | serious | libncbi-vdb2 uses undefined symbols</span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> ncbi-vdb | 953897 | serious | libncbi-vdb2 uses undefined symbols</span>
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> nibabel | 868229 | normal | NotImplementedError: Pixel Data is compressed in a format pydicom does not yet handle. Cannot return array</span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> nitime | 955103 | important | nitime: FTBFS with Sphinx 2.4: AttributeError: 'Sphinx' object has no attribute 'info'</span>
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183
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> nut-nutrition | 339838 | wishlist | nut-nutrition: Would like to record 'snacks' and change the number of meals</span>
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184
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> obitools | 935340 | normal | obitools: Port to Python3 needed</span>
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185
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> opencfu | 922589 | serious | FTBFS against opencv 4.0.1 (exp)</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -246,6 +246,7 @@ Last-Update: Fri, 27 Mar 2020 13:42:03 +0000</td>
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246
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246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> simka | 954273 | important | simka: arm64 autopkgtest time out</span>
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247
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247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> simpleitk | 949355 | serious | simpleitk FTBFS: test failures</span>
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248
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> snakemake | 943956 | wishlist | snakemake: please make the build reproducible</span>
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249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="plaintext"> snakemake | 955056 | important | snakemake: FTBFS with Sphinx 2.4: AttributeError: 'member_descriptor' object has no attribute 'expandtabs'</span>
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249
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250
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> snap | 927011 | minor | snap: Package info contains a 404 url</span>
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250
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> snap-aligner | 848589 | normal | snap-aligner: Build requires 188 GB of memory (fortunately not used, just allocated)</span>
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251
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> sofa-framework | 588278 | minor | sofa-tutorials: Sofa tutorials config file tutorial.pro uses SOFA_DIR=../.. that is incorrect</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -269,5 +270,5 @@ Last-Update: Fri, 27 Mar 2020 13:42:03 +0000</td>
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270
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="plaintext"> xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation</span>
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="plaintext"> xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"</span>
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271
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272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="plaintext"> xmedcon | 924017 | normal | desktop entry</span>
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="plaintext">(20<span class="idiff left right">4</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext">(20<span class="idiff left right">6</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"></span></pre>
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