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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/92e61b2752c01facde9b2583384b9f1bd9b1d578">92e61b27</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-29T13:44:39+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/92e61b2752c01facde9b2583384b9f1bd9b1d578#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 29 Mar 2020 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 29 Mar 2020 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 16<span class="idiff left right">7</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">7</span> | {imaging,practice,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 16<span class="idiff left right">8</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">5</span> | {imaging,practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> gdcm | 49 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 42 | {his,imaging,laboratory,covid-19,practice,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> amide | 3<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> amide | 3<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> htsjdk | 34 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dcm2niix | 3<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">8</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> gdcm | 2<span class="idiff left right">1</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dcm2niix | 3<span class="idiff left right">0</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">7</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> gdcm | 2<span class="idiff left right">0</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> minc-tools | 19 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> pixelmed | 19 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gnumed-server | 18 | {covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> pixelmed | 18 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> ngs-sdk | 17 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> openslide | 16 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> invesalius | 15 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> ncbi-entrez-direct | 15 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> openslide | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> vtk-dicom | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> biojava-live | 14 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> insighttoolkit4 | 14 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> king | 14 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> ncbi-entrez-direct | 14 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> adun.app | 13 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> insighttoolkit4 | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> cgview | 12 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> mia | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> psychopy | 12 | {psychology} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> ea-utils | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> jebl2 | 11 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> plastimatch | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> radiant | 11 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> <span class="idiff left right">biosig4c++ | 10 | {physics,imaging}</span> | </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> <span class="idiff left right">staden | 11 | {bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> dazzdb | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> diamond-aligner | 10 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> king-probe | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> librg-utils-perl | 10 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> norsp | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> obitools | 10 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> plastimatch | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> staden | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> tree-puzzle | 10 | {bio,cloud,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> biosig4c++ | 9 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> bppsuite | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> fastlink | 9 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> gdcm | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> mipe | 9 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> ncbi-seg | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> phast | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> prime-phylo | 9 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> abacas | 8 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -83,6 +83,7 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> lucy | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> mauve-aligner | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> microbegps | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> mlv-smile | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> paraclu | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> perm | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> placnet | 7 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -108,18 +109,19 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> dascrubber | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> elph | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> gatb-core | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"> ghmm | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> harvest-tools | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> indelible | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> ipig | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> jellyfish1 | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> logol | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> mapsembler2 | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"> mlv-smile | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> murasaki | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> orthanc-webviewer | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> parsnp | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> proalign | 6 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> pscan-chip | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> quorum | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> rambo-k | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> rdp-readseq | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -141,7 +143,6 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> cluster3 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> dwgsim | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> fastml | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="plaintext"> ghmm | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> hinge | 5 | {bio} | </span>
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147
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> jmodeltest | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -154,8 +155,8 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> openslide | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> patman | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> phipack | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> rdp-classifier | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"> salmon | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> sumatra | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> tvc | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> blasr | 4 | {bio-ngs,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -177,7 +178,6 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> relion | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> roguenarok | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> runcircos-gui | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="plaintext"> salmon | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> samblaster | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> sga | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> soapsnp | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -210,6 +210,7 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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210
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> libsmithwaterman | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> mencal | 2 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> nanook | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext"> ngs-sdk | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> qcumber | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> qrisk2 | 2 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> samtools-legacy | 2 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -221,9 +222,8 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> tree-puzzle | 2 | {cloud,bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> volpack | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> biosig4c++ | 1 | {imaging-dev,physics} | </span>
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="plaintext"> b<span class="idiff left right">limps | 1 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="plaintext"> b<span class="idiff left right">iosig4c++ | 1 | {physics,imaging-dev}</span> | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> edflib | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> embassy-phylip | 1 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -233,7 +233,6 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> maxflow | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="plaintext"> ngs-sdk | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> nutsqlite | 1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> opencfu | 1 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -242,7 +241,6 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> ragout | 1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC245" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> stringtie | 1 | {bio,covid-19} | </span>
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247
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245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> trace2dbest | 1 | {bio} | </span>
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246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> acedb | 0 | {bio,cloud} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -253,6 +251,7 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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253
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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254
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252
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> biosig4c++ | 0 | {physics} | </span>
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253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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254
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="plaintext"> blimps | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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256
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="plaintext"> emboss-explorer | 0 | {bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> emmax | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -261,6 +260,7 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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260
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="plaintext"> freecontact | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="plaintext"> gatb-core | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="plaintext"> htscodecs | 0 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="plaintext"> libbigwig | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="plaintext"> libbiod | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"> libbioparser-dev | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="plaintext"> libbpp-core | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -309,6 +309,7 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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309
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC310" class="line" lang="plaintext"> seqan | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="plaintext"> sift | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC313" class="line" lang="plaintext"> simpleitk | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="plaintext"> skewer | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC315" class="line" lang="plaintext"> smrtanalysis | 0 | {bio,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -317,5 +318,5 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC318" class="line" lang="plaintext"> trim-galore | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC319" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC320" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC320" class="line" lang="plaintext">(34<span class="idiff left right">5</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="plaintext">(34<span class="idiff left right">6</span> rows)</span>
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<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/92e61b2752c01facde9b2583384b9f1bd9b1d578#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 29 Mar 2020 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 29 Mar 2020 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> a<span class="idiff left right">tropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31</span>+00</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> a<span class="idiff left right">ugur | 6.4.2 | 6.4.3 | Andreas Tille | Andreas Tille | 2020-03-25 07:34:13</span>+00</span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> biobambam2 | 2.0.160 | 2.0.160+ds | Andreas Tille | Andreas Tille | 2020-03-27 10:34:45+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,7 +36,7 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> ncbi-entrez-direct | 12.0.20190816 | 13.5.20200306 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> pb<span class="idiff left right">seqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33</span>+00</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> pb<span class="idiff left right">copper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15</span>+00</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> plink2 | 2.00~a3-200217 | 200321 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-20 11:00:12+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,6 +45,7 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> python-cobra | 0.14.2 | 0.18.0 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> python-cutadapt | 2.8 | 2.9 | Andreas Tille,Kevin Murray,Olivier Sallou,Steffen Moeller | Steffen Moeller | 2020-02-03 10:50:38+00</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200326.ea0808a | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> python-skbio | 0.5.5 | 0.5.6 | Andreas Tille,Kevin Murray,Tim Booth | Michael R. Crusoe | 2020-02-28 14:48:20+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -57,12 +58,13 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> scrm | 1.7.3 | 1.7.4 | Kevin Murray | Andreas Tille | 2018-12-17 13:05:34+00</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> simka | 1.5.1 | 1.5.2 | Shayan Doust | Andreas Tille | 2020-01-12 18:49:47+00</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00</span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> spoa | 3.0.1 | 3.0.2 | Andreas Tille | Andreas Tille | 2019-09-16 11:53:05+00</span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> ugene | 33.0 | 34.0 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2020-01-12 16:25:44+00</span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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68
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70
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> source | id | severity | title </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -124,7 +126,6 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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124
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126
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> falcon | 936503 | serious | falcon: Python2 removal in sid/bullseye</span>
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125
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127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> fastlink | 909713 | minor | fastlink: Please provide autopkgtest</span>
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126
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128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> fastqc | 950311 | normal | fastqc: FAIL strings in output - what does this mean?</span>
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127
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="plaintext"> fermi-lite | 954127 | grave | fermi-lite broken on armhf</span>
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128
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> garli | 907905 | normal | garli: FTBFS randomly (failing tests)</span>
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129
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130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> gatb-core | 929564 | normal | gatb-core-testdata: broken symlink: /usr/share/doc/gatb-core/test/gatb-core-cppunit -> ../../../../lib/gatb-core/gatb-core-cppunit</span>
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130
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> gdcm | 731435 | normal | warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations]</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -237,7 +238,6 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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237
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238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> qiime | 950842 | serious | autopkg tests fail with Python 3.8</span>
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238
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239
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> qrisk2 | 912118 | normal | qrisk2: 2017 upstream release</span>
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239
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240
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> qrisk2 | 912119 | normal | qrisk2: please provide qrisk3</span>
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240
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="plaintext"> ragout | 953904 | serious | ragout: autopkgtest failure: "sibelia" is not installed.</span>
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<td class="diff-line-num old_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
241
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241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> rapmap | 909766 | important | Use Debian packaged spdlog instead of code copy of old version</span>
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<td class="diff-line-num old_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
242
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242
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> relion | 952003 | serious | relion: FTBFS: src/mpi.cpp:56:23: error: call to ‘MPI_Errhandler_set’ declared with attribute error: MPI_Errhandler_set was removed in MPI-3.0. Use MPI_Comm_set_errhandler instead.</span>
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243
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243
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> salmon | 952102 | serious | salmon: FTBFS: SalmonAlevin.cpp:780:6: error: ‘class rapmap::utils::MappingConfig’ has no member named ‘maxSlack’</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -273,5 +273,5 @@ Last-Update: Sun, 29 Mar 2020 01:42:04 +0000</td>
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273
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273
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation</span>
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274
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"> xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"</span>
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275
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275
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> xmedcon | 924017 | normal | desktop entry</span>
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="plaintext">(20<span class="idiff left right">6</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="plaintext">(20<span class="idiff left right">4</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="plaintext"></span></pre>
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