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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/30be041be0774deb0dbfa5232b963e497071a6d5">30be041b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-03-31T01:44:21+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/30be041be0774deb0dbfa5232b963e497071a6d5#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Mon, 30 Mar 2020 13:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Tue, 31 Mar 2020 01:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/30be041be0774deb0dbfa5232b963e497071a6d5#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Mon, 30 Mar 2020 13:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Tue, 31 Mar 2020 01:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,6 +12,7 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> ctdopts | 1.2 | 1.3 | Michael R. Crusoe | Michael R. Crusoe | 2018-02-28 12:34:26+00</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> cwltool | 2.0.20200224214940 | 3.0.20200324120055 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> cyvcf2 | 0.11.6 | 0.11.7 | Liubov Chuprikova,Steffen Moeller | Andreas Tille | 2020-03-30 09:03:56+00</span>
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00</span>
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17
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,7 +22,6 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> htsjdk | 2.18.2 | 2.21.3 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Andreas Tille | 2019-03-01 22:19:40+00</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> igraph | 0.8.0 | 0.8.1 | Andreas Tille | Andreas Tille | 2020-03-14 20:10:56+00</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00</span>
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20200325.3558942 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -91,7 +91,6 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> camp | 900181 | normal | camp: FTBFS on 32bit big endian: check metaclass->function("f4").call(object, camp::Args(1, 4, 15)).to<unsigned long>() == 20 has failed</span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> clonalorigin | 884475 | wishlist | clonalorigin: FTBFS on alpha: tests time out</span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> cwltool | 954496 | serious | cwltool: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.7 3.8" returned exit code 13</span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="plaintext"> cyvcf2 | 954603 | serious | cyvcf2: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.7 3.8" returned exit code 13</span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> dawg | 903886 | important | dawg: Test suite fails</span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> dcmtk | 637687 | wishlist | libdcmtk2-dev: Dcmtk headers cause compile failure</span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> dcmtk | 675448 | important | dcmtk: dcmdjpeg does not set (0028, 2114) LossyImageCompressionMethod when decompressing lossy compressed DICOM file</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -140,7 +139,6 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> htsjdk | 877590 | normal | FTBFS: error: package org.testng does not exist</span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> htsjdk | 920588 | normal | htsjdk: Autopkgtest for htsjdk</span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> htslib | 922860 | normal | Packages do not contain the upstream README file</span>
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="plaintext"> igraph | 953941 | serious | igraph - Incomplete debian/copyright</span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> igv | 940606 | normal | new upstream (2.6.3)</span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> insighttoolkit4 | 724711 | wishlist | insighttoolkit4: Drops architecture support</span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> insighttoolkit4 | 759794 | wishlist | insighttoolkit4: FTBFS on amd64 with ENOSPC</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -216,7 +214,6 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> pynast | 937488 | normal | pynast: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> pynast | 948081 | serious | pynast build depends on and recommends the removed blast2 transitional package</span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> pynn | 813821 | serious | pynn: FTBFS: TypeError: 'float' object cannot be interpreted as an index</span>
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="plaintext"> pyqi | 954500 | serious | pyqi: FTBFS: dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2</span>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> python-biom-format | 820060 | normal | python-biom-format: broken on big-endian architectures</span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> python-biom-format | 950929 | normal | python-biom-format: FTBFS with pandas 1.0: test failures</span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> python-cogent | 950474 | important | python-cogent FTBFS on armel and i386: test failures</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -228,7 +225,6 @@ Last-Update: Mon, 30 Mar 2020 13:42:04 +0000</td>
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225
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> python-pysam | 938092 | normal | python-pysam: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> python-ruffus | 841073 | wishlist | python-ruffus: Needs 18 GB of RAM to build</span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> python-tinyalign | 952603 | normal | python-tinyalign: license of buildwheels.sh is CC0</span>
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="plaintext"> python-wordcloud | 955336 | normal | python-wordcloud: d/copyright: wordcloud/_version.py has a different license</span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> q2cli | 954601 | serious | q2cli: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.8 -s custom "--test-args=cd {build_dir}; HOME=/<<PKGBUILDDIR>> QIIMETEST= nosetests3" returned exit code 13</span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> q2-demux | 950933 | normal | q2-demux: FTBFS with pandas 1.0: test failures</span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> q2templates | 950931 | normal | q2templates: FTBFS with pandas 1.0: test failures</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"> xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation</span>
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="plaintext"> xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"</span>
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="plaintext"> xmedcon | 924017 | normal | desktop entry</span>
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="plaintext">(<span class="idiff left right">203</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext">(<span class="idiff left right">199</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"></span></pre>
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